Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq30 316 2e-81 seq53 154 2e-32 seq49 154 2e-32 seq7 154 2e-32 seq1 127 2e-24 seq11 98.7 1e-15 >seq30 Length=443502 Score = 316 bits (350), Expect = 2e-81 Identities = 437/609 (72%), Gaps = 2/609 (0%) Strand=Plus/Minus Query 116582 CTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGG 116641 || |||| || ||||| ||| || ||| | ||||| || || ||| ||| || ||| Sbjct 288974 CTTCTGCAGGACAACCCGGACCGCTTTGTGCTGTTCCCTATCCAGCACCAGGATATCTGG 288915 Query 116642 CGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAG 116701 | |||||| ||||||||||| ||||||||||| | |||||||| |||||| | || Sbjct 288914 GACGCGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCTGAGGAGGTCGACCTGGGCCAG 288855 Query 116702 GACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTG 116761 || | |||||| || ||| | | ||||| || || |||||||||||||| Sbjct 288854 GATCAGCGCGACTTTGACTCGATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTGCTG 288795 Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG 116821 || || || || || |||||||||||| |||||| |||| ||| || | Sbjct 288794 GCGTTCTTTGCTTCCTCGGACGGCATCGTCCTCGAGAACGTGGTGGAGAACTTTTGTAGT 288735 Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881 |||||| ||| | |||||||| ||||| |||||||| ||||| ||||| |||||| | Sbjct 288734 GAGGTGAGTGTGCCGGAGGCGCGCTGCTTTTACGGCTTCCAGATGGCCATCGAGAACATT 288675 Query 116882 CACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA-GGAGAAGCT 116940 || | || |||| ||| ||||||||||| ||| | ||| || | ||||||| Sbjct 288674 CATGCCGAGGTGTACTCGCTGCTCATCGACACCTACATTCGC-GACCGCACCGAGAAGCA 288616 Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 | || | || || ||| | ||| |||||||||| |||||||| |||||||| | Sbjct 288615 CAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGTGCGGGAGAAGGCGCAGTGGGCGAT 288556 Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||||| || | ||||| | |||| | |||||||| || | ||| || ||||| Sbjct 288555 GCGCTACATGGACGGCAACATTTGCACCTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGT 288496 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 || ||| |||||||||| ||| |||| ||| || |||||||||||||| |||||||| Sbjct 288495 GGAAGGCATCTTCTTTTCTGGCTCTTTCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCT 288436 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 |||||| ||||| || || ||||||||||||| | | |||||||| |||| || Sbjct 288435 CATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCGACGAGGGCATGCACACTGA 288376 Query 117181 CTTTGCCTG 117189 |||||| || Sbjct 288375 CTTTGCTTG 288367 >seq53 Length=241909 Score = 154 bits (170), Expect = 2e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || || ||||| || |||||||| || ||||||||| |||| ||||| || | ||| Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279 Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | |||| | ||| | || |||| ||||| ||||| || ||| | || ||||| Sbjct 193280 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCA 193338 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || ||||||| ||| ||||| ||||| || |||| ||||| |||| |||||||||||| Sbjct 193339 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 193398 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| |||| || || || || Sbjct 193399 CCAGAAGGAGTCCACCCTCCACCTGGT 193425 >seq49 Length=285000 Score = 154 bits (170), Expect = 2e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || ||||| || || || |||||||| ||||||||| |||| ||||| || | ||| Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178 Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | |||| | ||| | || || | ||||| ||||| |||||| | || ||||| Sbjct 148179 ACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCA 148237 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || ||||||| ||| ||||| ||||| || |||| ||||| |||| |||||||||||| Sbjct 148238 GCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 148297 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||| | || || || || ||| | ||| Sbjct 148298 CCAGAAGGAGTCTACCCTCCACCTCGTGCTCCGC 148331 >seq7 Length=852142 Score = 154 bits (170), Expect = 2e-32 Identities = 166/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| ||||||||| | || ||||| | | Sbjct 77489 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77548 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| | || || | || || ||||| || ||| | || || Sbjct 77549 GACACCATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCA 77607 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 77608 GCAGCGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 77667 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| |||| || || || ||| | ||| Sbjct 77668 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 77704 Score = 150 bits (166), Expect = 2e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||||||||||||| | || ||||| | Sbjct 76802 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCT 76861 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| | || || | || || |||||||| ||| | || Sbjct 76862 TCGGACACTATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGA 76920 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| ||| ||||| ||||| || |||| ||||| || | |||||| Sbjct 76921 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTA 76980 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| | || || || || ||| | ||| Sbjct 76981 CAACATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCGC 77020 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || ||||| ||||| ||||||||| | || ||||| | | Sbjct 77033 ATGCAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77092 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || |||| || || ||||| |||||| | || || Sbjct 77093 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCA 77151 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 77152 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77211 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | || || || || ||| | ||| Sbjct 77212 CATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCGC 77248 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || || || |||| ||||| || | Sbjct 77261 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77320 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| | || |||| ||||| ||||| || ||| | || || Sbjct 77321 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 77379 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 77380 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77439 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | || || || || ||| | ||| Sbjct 77440 CATCCAGAAGGAGTCTACTCTCCACCTTGTGCTCCGC 77476 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| || || || |||| ||||| || | Sbjct 77717 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77776 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| | || || | ||||| ||||| || ||| | || || Sbjct 77777 GACACGATTGAGAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCA 77835 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 77836 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAA 77895 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | ||||| || || ||| | ||| Sbjct 77896 CATCCAGAAGGAGTCTACGCTCCACCTGGTGCTCCGC 77932 >seq1 Length=1674554 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC 40782 || |||||| |||| ||||| || | |||| | | | | | ||| | || || | Sbjct 772171 ACTATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAG 772230 Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||| |||||| | || ||||| || || |||| ||| ||||| |||||||| Sbjct 772231 GACAAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAG 772290 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| || | |||||||||||||||||||||| |||| || || || || | Sbjct 772291 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTC 772350 Query 40903 CGCTTGAGGGGCGGCGGC 40920 ||| | | || |||||| Sbjct 772351 CGCCTTCGTGGTGGCGGC 772368 >seq11 Length=765042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 139360 CGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGG 139419 ||||||| ||| |||| ||||||||||||| | ||| |||| ||||||| |||| ||| Sbjct 58757 CGGCCTGACGCCCGGCAAGCACGGCTTCCACATCCACCAGTTTGGCGACGTGAGCTCCGG 58698 Query 139420 GTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGC 139479 ||| | |||||| |||| |||||| | || | ||||||||||||||| | Sbjct 58697 CTGCGCCAGCACCGGCGGCCACTACAACCCGTCCGGCAAGACCCACGGCGCGCCCGAGGA 58638 Query 139480 CGA-GATCAGGCACGTCGGCGACCTGGGCAACCTCGAG 139516 || || | | |||| ||||||||| |||||| | ||| Sbjct 58637 TGACGAGC-GCCACGCCGGCGACCTTGGCAACATTGAG 58601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217126242720