Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq30 316 2e-81
seq53 154 2e-32
seq49 154 2e-32
seq7 154 2e-32
seq1 127 2e-24
seq11 98.7 1e-15
>seq30
Length=443502
Score = 316 bits (350), Expect = 2e-81
Identities = 437/609 (72%), Gaps = 2/609 (0%)
Strand=Plus/Minus
Query 116582 CTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGG 116641
|| |||| || ||||| ||| || ||| | ||||| || || ||| ||| || |||
Sbjct 288974 CTTCTGCAGGACAACCCGGACCGCTTTGTGCTGTTCCCTATCCAGCACCAGGATATCTGG 288915
Query 116642 CGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAG 116701
| |||||| ||||||||||| ||||||||||| | |||||||| |||||| | ||
Sbjct 288914 GACGCGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCTGAGGAGGTCGACCTGGGCCAG 288855
Query 116702 GACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTG 116761
|| | |||||| || ||| | | ||||| || || ||||||||||||||
Sbjct 288854 GATCAGCGCGACTTTGACTCGATGACCAAGGGCGAGCAGCACTTTGTCAAGCACGTGCTG 288795
Query 116762 GCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG 116821
|| || || || || |||||||||||| |||||| |||| ||| || |
Sbjct 288794 GCGTTCTTTGCTTCCTCGGACGGCATCGTCCTCGAGAACGTGGTGGAGAACTTTTGTAGT 288735
Query 116822 GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTG 116881
|||||| ||| | |||||||| ||||| |||||||| ||||| ||||| |||||| |
Sbjct 288734 GAGGTGAGTGTGCCGGAGGCGCGCTGCTTTTACGGCTTCCAGATGGCCATCGAGAACATT 288675
Query 116882 CACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA-GGAGAAGCT 116940
|| | || |||| ||| ||||||||||| ||| | ||| || | |||||||
Sbjct 288674 CATGCCGAGGTGTACTCGCTGCTCATCGACACCTACATTCGC-GACCGCACCGAGAAGCA 288616
Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000
| || | || || ||| | ||| |||||||||| |||||||| |||||||| |
Sbjct 288615 CAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGTGCGGGAGAAGGCGCAGTGGGCGAT 288556
Query 117001 GCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060
||||| || | ||||| | |||| | |||||||| || | ||| || |||||
Sbjct 288555 GCGCTACATGGACGGCAACATTTGCACCTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGT 288496
Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120
|| ||| |||||||||| ||| |||| ||| || |||||||||||||| ||||||||
Sbjct 288495 GGAAGGCATCTTCTTTTCTGGCTCTTTCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCT 288436
Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180
|||||| ||||| || || ||||||||||||| | | |||||||| |||| ||
Sbjct 288435 CATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCGACGAGGGCATGCACACTGA 288376
Query 117181 CTTTGCCTG 117189
|||||| ||
Sbjct 288375 CTTTGCTTG 288367
>seq53
Length=241909
Score = 154 bits (170), Expect = 2e-32
Identities = 160/207 (77%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752
|| || || ||||| || |||||||| || ||||||||| |||| ||||| || | |||
Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279
Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | |||| | ||| | || |||| ||||| ||||| || ||| | || |||||
Sbjct 193280 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCA 193338
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
|| ||||||| ||| ||||| ||||| || |||| ||||| |||| ||||||||||||
Sbjct 193339 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 193398
Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||| |||| || || || ||
Sbjct 193399 CCAGAAGGAGTCCACCCTCCACCTGGT 193425
>seq49
Length=285000
Score = 154 bits (170), Expect = 2e-32
Identities = 164/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752
|| || ||||| || || || |||||||| ||||||||| |||| ||||| || | |||
Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178
Query 40753 AGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | |||| | ||| | || || | ||||| ||||| |||||| | || |||||
Sbjct 148179 ACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCA 148237
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
|| ||||||| ||| ||||| ||||| || |||| ||||| |||| ||||||||||||
Sbjct 148238 GCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 148297
Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||| | || || || || ||| | |||
Sbjct 148298 CCAGAAGGAGTCTACCCTCCACCTCGTGCTCCGC 148331
>seq7
Length=852142
Score = 154 bits (170), Expect = 2e-32
Identities = 166/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| ||||||||| | || ||||| | |
Sbjct 77489 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77548
Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| | || || | || || ||||| || ||| | || ||
Sbjct 77549 GACACCATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCA 77607
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 77608 GCAGCGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 77667
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| |||| || || || ||| | |||
Sbjct 77668 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGC 77704
Score = 150 bits (166), Expect = 2e-31
Identities = 167/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||||||||||||||||||| | || ||||| |
Sbjct 76802 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCT 76861
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | |||| ||||| | || || | || || |||||||| ||| | ||
Sbjct 76862 TCGGACACTATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGA 76920
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||||| || ||||||| ||| ||||| ||||| || |||| ||||| || | ||||||
Sbjct 76921 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTA 76980
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|||||||||||||||| | || || || || ||| | |||
Sbjct 76981 CAACATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCGC 77020
Score = 150 bits (166), Expect = 2e-31
Identities = 165/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || ||||| || ||||| ||||| ||||||||| | || ||||| | |
Sbjct 77033 ATGCAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77092
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| | || |||| || || ||||| |||||| | || ||
Sbjct 77093 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCA 77151
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| ||||| || | |||||||||
Sbjct 77152 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77211
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| | || || || || ||| | |||
Sbjct 77212 CATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCGC 77248
Score = 136 bits (150), Expect = 4e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || || || |||| ||||| || |
Sbjct 77261 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77320
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| | || |||| ||||| ||||| || ||| | || ||
Sbjct 77321 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 77379
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||| ||||| ||||| || |||| ||||| || | |||||||||
Sbjct 77380 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77439
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| | || || || || ||| | |||
Sbjct 77440 CATCCAGAAGGAGTCTACTCTCCACCTTGTGCTCCGC 77476
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| || || || |||| ||||| || |
Sbjct 77717 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77776
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| ||||| | || || | ||||| ||||| || ||| | || ||
Sbjct 77777 GACACGATTGAGAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCA 77835
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| ||||| ||||| || || | ||||| || | |||||||||
Sbjct 77836 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAA 77895
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
||||||||||||| | ||||| || || ||| | |||
Sbjct 77896 CATCCAGAAGGAGTCTACGCTCCACCTGGTGCTCCGC 77932
>seq1
Length=1674554
Score = 127 bits (140), Expect = 2e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTC 40782
|| |||||| |||| ||||| || | |||| | | | | | ||| | || || |
Sbjct 772171 ACTATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAG 772230
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||||||||| |||||| | || ||||| || || |||| ||| ||||| ||||||||
Sbjct 772231 GACAAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAG 772290
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||| || | |||||||||||||||||||||| |||| || || || || |
Sbjct 772291 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTC 772350
Query 40903 CGCTTGAGGGGCGGCGGC 40920
||| | | || ||||||
Sbjct 772351 CGCCTTCGTGGTGGCGGC 772368
>seq11
Length=765042
Score = 98.7 bits (108), Expect = 1e-15
Identities = 118/158 (75%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 139360 CGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGG 139419
||||||| ||| |||| ||||||||||||| | ||| |||| ||||||| |||| |||
Sbjct 58757 CGGCCTGACGCCCGGCAAGCACGGCTTCCACATCCACCAGTTTGGCGACGTGAGCTCCGG 58698
Query 139420 GTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGC 139479
||| | |||||| |||| |||||| | || | ||||||||||||||| |
Sbjct 58697 CTGCGCCAGCACCGGCGGCCACTACAACCCGTCCGGCAAGACCCACGGCGCGCCCGAGGA 58638
Query 139480 CGA-GATCAGGCACGTCGGCGACCTGGGCAACCTCGAG 139516
|| || | | |||| ||||||||| |||||| | |||
Sbjct 58637 TGACGAGC-GCCACGCCGGCGACCTTGGCAACATTGAG 58601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217126242720
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