Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq7 163 2e-35 seq49 149 5e-31 seq53 147 2e-30 seq1 113 4e-20 seq61 107 2e-18 >seq7 Length=852142 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||| || || |||||||| ||||| | ||||| ||||| Sbjct 77242 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77183 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| ||||||||||||||||||| || || || |||||||| || Sbjct 77182 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTG 77123 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | || | |||||||| |||||| || | ||| | || || Sbjct 77122 AATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTT 77063 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||||| ||||||||||||||||| Sbjct 77062 GCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||| || || |||||||| ||||| | ||||| ||||| Sbjct 77470 CACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77411 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| ||||||||||||||||||| || || || ||||||||||| Sbjct 77410 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 77351 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | || | |||||||| | |||||| |||| || | || || Sbjct 77350 AATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTT 77291 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || ||||| |||||||| Sbjct 77290 GCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| |||||||| || || |||||||| ||||| | ||||| |||||| Sbjct 77926 CACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTC 77867 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| | ||||||||||||||||| || || || ||||||||||| Sbjct 77866 GAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTG 77807 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | ||||||| | |||||| |||| || | || || Sbjct 77806 GATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTT 77747 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || ||||| |||||||| Sbjct 77746 GCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| |||||||| || || |||||||| ||||| | ||||| ||||| Sbjct 77014 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 76955 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| ||||||||||||||||||| || || ||||||||||| || Sbjct 76954 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTG 76895 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | ||||||| |||||| || | ||| | ||||| Sbjct 76894 GATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTT 76835 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 76834 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||||| | ||||| ||||| Sbjct 77698 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 77639 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| ||||||||||||||||||| || || || |||||||| || Sbjct 77638 GAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTG 77579 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | |||||||| |||||| || | ||| | || || Sbjct 77578 GATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTT 77519 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 77518 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 >seq49 Length=285000 Score = 149 bits (164), Expect = 5e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | | ||| | ||||| |||||||| || || |||||||| ||||| Sbjct 148343 ACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 148284 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| ||||||||||| || || ||| |||||||||||||||||||||| || Sbjct 148283 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 148224 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || || | |||| |||||||| | |||||| Sbjct 148223 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 148164 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735 |||| ||| | || ||||| || || || || || || ||||| Sbjct 148163 ATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq53 Length=241909 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||| | ||||| |||||| Sbjct 193425 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 193366 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| ||||||| ||||||||||| || || || ||||||||||| | Sbjct 193365 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 193306 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || || | |||| |||||||| | |||||| |||| ||| | || || Sbjct 193305 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTA 193246 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTG 118735 || || || || |||||||| ||||| Sbjct 193245 CCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq1 Length=1674554 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 772346 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 772287 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| || ||||||||||| || || || ||||| ||||| Sbjct 772286 AGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGG 772227 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGT 118699 || || || || || | |||| |||||||| | |||||| |||| ||| Sbjct 772226 ATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGT 772177 >seq61 Length=193651 Score = 107 bits (118), Expect = 2e-18 Identities = 243/360 (68%), Gaps = 4/360 (1%) Strand=Plus/Minus Query 133011 TTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACA- 133069 || ||||| || ||| || || || | | |||||||||| || | || || | || Sbjct 59358 TTGAGCGACTGCGACTGGTCAATAAAGGCACCACGGTCGGCCGCAAGGTCAATGAGGCAA 59299 Query 133070 CTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTC 133129 | || || ||||||||| |||||||| | || ||||| | | || || || Sbjct 59298 CGCTGCTT-GATCTCCCACACCGTCTTGTAAAGTGCCTTGAGGTCATCCGGGATGACGGA 59240 Query 133130 AATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAAT 133189 ||||||||||| || ||| ||||||| || | |||||| | || || || | | Sbjct 59239 GATGTTCTGCACCGAACCGCGATCGGCCATGATGTGGTTGCGAATCTCAGGCGTCCAGAG 59180 Query 133190 GTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAG 133249 | || || ||| || | ||||| || | | ||| || || | |||||||||||||| Sbjct 59179 GCCGCGAGAGATGAGGTCCTTGACCAGGTGCGCGTTAACGACGTTGAACTCGCCGGCGAG 59120 Query 133250 AACGCGTC-TGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTA 133308 |||||| | ||| || | || || || || || || | ||| ||| ||||| | Sbjct 59119 AACGCGGCGCGAG-TACATGTTGCTGGTAAAAGGCTCAAAGGCCTCGCAGTTTCCGAGAA 59061 Query 133309 TCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACT 133368 |||||| || | |||||||||||| ||| || | | ||||| | |||||||| || Sbjct 59060 TCTGCGAAGTTGAGGCCGTGGGCATGGGCGCGACAAGGAGCGAGTTACGTACGCCGTGCT 59001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828697486824