Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 3e-15 >seq30 Length=443502 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| ||| |||| || ||||| | || || | |||||| ||||| || || Sbjct 288367 CAAGCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGG 288426 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| || || || || || | |||||| || ||| || || ||||||||||| Sbjct 288427 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAG 288486 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 || ||||| || |||||||| |||| | |||||| Sbjct 288487 ATGCCTTCCACGGCGGCAAAGCCAACAAGGCGCTCA 288522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510138389200