Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq61 122 2e-22
seq2 122 2e-22
>seq61
Length=193651
Score = 122 bits (134), Expect = 2e-22
Identities = 430/661 (65%), Gaps = 23/661 (3%)
Strand=Plus/Plus
Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868
|| || |||||||| | ||||| ||||| ||||| ||| ||||| || ||||| |
Sbjct 57641 GACTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGGTC 57700
Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928
| | |||||| | || || ||||| ||| | ||||| || |||| || || |||
Sbjct 57701 AACGACAAGATTGCCGAGCGCCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCAC 57760
Query 248929 AAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986
||||| ||||| || ||||| | ||||| |||| | ||| || | | |
Sbjct 57761 AAGGAAGACATTGAC--CGTGCCATTGAGACCTACAACATGATGTCGCAAAAGTTCTTTA 57818
Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCT 249046
| || ||||| || ||||||||||||||||||||| | | | || || ||| |||
Sbjct 57819 CGCACGCCACGCCCACGCTCTTCAACGCCGGTACC--CCGC-GCCCGCAGATGTCGAGCT 57875
Query 249047 --TTCTTCTTGC-CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103
||| || ||| |||| | |||||||| | || ||||| | | ||||| |||
Sbjct 57876 GCTTCCTCGTGCACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCT---CGAGA 57932
Query 249104 CG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160
|| ||| || || || | ||| ||||| || ||| || | || |||||| || |
Sbjct 57933 CGTGCGCGCGCATCTCCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCG 57992
Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCT 249218
| ||| ||| | || || || || ||| | || ||||| ||| | ||
Sbjct 57993 CTTCGGGAAGCTACGTGGCCGGCACCAACGGCAAGTC--CAACGGCATCGTGCCCATGCT 58050
Query 249219 TCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTC 249275
|| ||| | ||| ||| | | | | |||||| ||| || || ||||| ||
Sbjct 58051 GCGCGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTC 58110
Query 249276 GTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAA 249335
|| |||||||| | || ||||| ||||| | || || | || | ||
Sbjct 58111 CTTTGCCATGTACCTTGAGCCCTGGCATGCCGACGTCGAAGACTTTATTGAGCTCCGCAA 58170
Query 249336 GAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGA 249395
|||| |||| || ||| | | ||||| |||||||| |||| || |||||| | ||
Sbjct 58171 GAACCACGGTAAGGAGGAGAACCGCGCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGA 58230
Query 249396 CTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGC 249455
| | |||||| |||||| |||| || || |||||||| ||| ||| ||| ||
Sbjct 58231 CCTTTTCATGGAGCGCGTCGAGGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGAGGC 58290
Query 249456 C 249456
|
Sbjct 58291 C 58291
>seq2
Length=1552223
Score = 122 bits (134), Expect = 2e-22
Identities = 268/389 (69%), Gaps = 26/389 (7%)
Strand=Plus/Minus
Query 254006 TCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGC 254065
|| |||| ||| |||| || || ||||| |||||||||||||| || || || ||||
Sbjct 1272571 TCTTTTGTTTT---ACGGCCCGCCAGGAACGGGCAAGACGTCAACGATTCTCGCAGTGGC 1272515
Query 254066 CCG--AACCCTGTTGGGCGAGGGGA--ACATGAGAGAGCGCGTGCTCGAGCTGAACGCTT 254121
| || || |||| | | || ||| || | ||||| || ||||| |||||||
Sbjct 1272514 CAAGCAAATCT-TTGGCCCCGTCGAGTACAGGAAA---CGCGTTCTAGAGCTCAACGCTT 1272459
Query 254122 CTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG--ACTTTC-TCCAAGAT-G 254177
| ||||| ||||| | ||||| ||||| || ||||| | || | |||| || |
Sbjct 1272458 CCGACGAGCGCGGCATTTCGGTCGTGCGCGAAAAAGTCAAGGGATTTGCGTCCACGACCG 1272399
Query 254178 TCGATTTCGTC--GTTCCAACCCG----GCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231
| | | || | | || | | | || ||||||||||| || | ||||| |||
Sbjct 1272398 TAGGATCCGCCACGCTCAATGGCAAAAAGTTG-CCGCCTTTCAAACTTATCATCCTCGAC 1272340
Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291
|| || ||| ||||| | | ||||||||| ||| |||||||| || |||||| | ||
Sbjct 1272339 GAAGCAGACTCCATGTCCGAGGACGCGCAGAGCGCGCTCCGCCGCACAATGGAGCTGTAC 1272280
Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGC 254349
|| || ||||| ||||| || || || |||||||| |||| ||||||| || |
Sbjct 1272279 ACCCGCGTCACGCGCTTTTGTCTCGTTTGTAACTACGTAAGTCG--CATCATCGAGCCAC 1272222
Query 254350 TGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378
| || || || ||||| || || || |||
Sbjct 1272221 TCGCGTCCCGTTGCGCAAAATTCCGCTTC 1272193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073761970042496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |