Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq61 122 2e-22 seq2 122 2e-22 >seq61 Length=193651 Score = 122 bits (134), Expect = 2e-22 Identities = 430/661 (65%), Gaps = 23/661 (3%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||| | ||||| ||||| ||||| ||| ||||| || ||||| | Sbjct 57641 GACTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGGTC 57700 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | | |||||| | || || ||||| ||| | ||||| || |||| || || ||| Sbjct 57701 AACGACAAGATTGCCGAGCGCCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCAC 57760 Query 248929 AAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 ||||| ||||| || ||||| | ||||| |||| | ||| || | | | Sbjct 57761 AAGGAAGACATTGAC--CGTGCCATTGAGACCTACAACATGATGTCGCAAAAGTTCTTTA 57818 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCT 249046 | || ||||| || ||||||||||||||||||||| | | | || || ||| ||| Sbjct 57819 CGCACGCCACGCCCACGCTCTTCAACGCCGGTACC--CCGC-GCCCGCAGATGTCGAGCT 57875 Query 249047 --TTCTTCTTGC-CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGA 249103 ||| || ||| |||| | |||||||| | || ||||| | | ||||| ||| Sbjct 57876 GCTTCCTCGTGCACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCT---CGAGA 57932 Query 249104 CG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160 || ||| || || || | ||| ||||| || ||| || | || |||||| || | Sbjct 57933 CGTGCGCGCGCATCTCCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCG 57992 Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCT 249218 | ||| ||| | || || || || ||| | || ||||| ||| | || Sbjct 57993 CTTCGGGAAGCTACGTGGCCGGCACCAACGGCAAGTC--CAACGGCATCGTGCCCATGCT 58050 Query 249219 TCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTC 249275 || ||| | ||| ||| | | | | |||||| ||| || || ||||| || Sbjct 58051 GCGCGTCTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTC 58110 Query 249276 GTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAA 249335 || |||||||| | || ||||| ||||| | || || | || | || Sbjct 58111 CTTTGCCATGTACCTTGAGCCCTGGCATGCCGACGTCGAAGACTTTATTGAGCTCCGCAA 58170 Query 249336 GAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGA 249395 |||| |||| || ||| | | ||||| |||||||| |||| || |||||| | || Sbjct 58171 GAACCACGGTAAGGAGGAGAACCGCGCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGA 58230 Query 249396 CTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGC 249455 | | |||||| |||||| |||| || || |||||||| ||| ||| ||| || Sbjct 58231 CCTTTTCATGGAGCGCGTCGAGGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGAGGC 58290 Query 249456 C 249456 | Sbjct 58291 C 58291 >seq2 Length=1552223 Score = 122 bits (134), Expect = 2e-22 Identities = 268/389 (69%), Gaps = 26/389 (7%) Strand=Plus/Minus Query 254006 TCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGC 254065 || |||| ||| |||| || || ||||| |||||||||||||| || || || |||| Sbjct 1272571 TCTTTTGTTTT---ACGGCCCGCCAGGAACGGGCAAGACGTCAACGATTCTCGCAGTGGC 1272515 Query 254066 CCG--AACCCTGTTGGGCGAGGGGA--ACATGAGAGAGCGCGTGCTCGAGCTGAACGCTT 254121 | || || |||| | | || ||| || | ||||| || ||||| ||||||| Sbjct 1272514 CAAGCAAATCT-TTGGCCCCGTCGAGTACAGGAAA---CGCGTTCTAGAGCTCAACGCTT 1272459 Query 254122 CTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG--ACTTTC-TCCAAGAT-G 254177 | ||||| ||||| | ||||| ||||| || ||||| | || | |||| || | Sbjct 1272458 CCGACGAGCGCGGCATTTCGGTCGTGCGCGAAAAAGTCAAGGGATTTGCGTCCACGACCG 1272399 Query 254178 TCGATTTCGTC--GTTCCAACCCG----GCTGTCCGCCTTTCAAGCTCGTGATCCTGGAC 254231 | | | || | | || | | | || ||||||||||| || | ||||| ||| Sbjct 1272398 TAGGATCCGCCACGCTCAATGGCAAAAAGTTG-CCGCCTTTCAAACTTATCATCCTCGAC 1272340 Query 254232 GAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCAC 254291 || || ||| ||||| | | ||||||||| ||| |||||||| || |||||| | || Sbjct 1272339 GAAGCAGACTCCATGTCCGAGGACGCGCAGAGCGCGCTCCGCCGCACAATGGAGCTGTAC 1272280 Query 254292 TCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGC 254349 || || ||||| ||||| || || || |||||||| |||| ||||||| || | Sbjct 1272279 ACCCGCGTCACGCGCTTTTGTCTCGTTTGTAACTACGTAAGTCG--CATCATCGAGCCAC 1272222 Query 254350 TGGCTTCTCGGTGCGCCAAGTTTCGATTC 254378 | || || || ||||| || || || ||| Sbjct 1272221 TCGCGTCCCGTTGCGCAAAATTCCGCTTC 1272193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761970042496