Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq61 206 2e-48 seq30 170 2e-37 seq7 118 9e-22 seq49 102 7e-17 >seq61 Length=193651 Score = 206 bits (228), Expect = 2e-48 Identities = 422/624 (68%), Gaps = 10/624 (2%) Strand=Plus/Minus Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || ||||| ||| ||||| || || | ||| || ||||| || || ||||| ||||| Sbjct 58251 TCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGCGCGCGG 58192 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 |||||| || ||| |||||| | || | |||||| ||||| |||||||| Sbjct 58191 TTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCATGCCAG 58132 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 ||||| ||||| | |||||| | |||| | ||| ||||||||| || ||||| ||| Sbjct 58131 GGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGG 58072 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 ||||||| |||| | || | ||||| ||||||| ||||||||| |||| ||| Sbjct 58071 GCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTGGTGCCG 58012 Query 23582 GCCACACTCGAACCTTTT----GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637 ||||| | | ||| || |||| |||||| | || || ||| ||||| ||| | Sbjct 58011 GCCAC----GTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCGGC 57956 Query 23638 CGATTTCGATATCATCGCGCATTGTTTC-AGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 | || || || |||||| || || || || | | |||||||||| || ||| | Sbjct 57955 GTACTTGGAGATGCGCGCGCAC-GTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGTCGT 57897 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 | || | || | ||| || ||||| |||| || ||| |||| ||| | Sbjct 57896 CCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGAAGA 57837 Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816 | || || |||||||||||||| | | |||||| | ||||| || || ||||| Sbjct 57836 GCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGGCAC 57777 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 |||||||| || ||| ||||| | | ||| ||||| | ||| | || || | || Sbjct 57776 GGTCAATGTCTTCCTTGTGGATACCCACAGAGACACGCATGAGCATCTGCTGGGGGCGCT 57717 Query 23877 CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAAT 23936 || | | | |||| | |||| ||| || || || | | ||| || || ||||| | Sbjct 57716 CGGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCAAAGT 57657 Query 23937 AGTCATAGTTAAAGTCACGATCGT 23960 |||| || | ||||| || |||| Sbjct 57656 AGTCGTACTCGAAGTCGCGCTCGT 57633 >seq30 Length=443502 Score = 170 bits (188), Expect = 2e-37 Identities = 382/566 (67%), Gaps = 12/566 (2%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| || |||||| ||||| || || ||||| ||||| | || || || ||| Sbjct 288923 GATATCTGGGACGCGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCTGAGGAGGTCGAC 288864 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA--AAGAATCTGAGAGAA--ATTTTAT 57682 ||| |||||| | |||| | || || | | ||| | ||| | | ||| | Sbjct 288863 CTGGGCCAGGATCAGCGCGACTTTGACTCGATGACCAAGG----GCGAGCAGCACTTTGT 288808 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 || |||||| ||||||| || || | || || || || || |||||| |||| || Sbjct 288807 CAAGCACGTGCTGGCGTTCTTTGCTTCCTCGGACGGCATCGTCCTCGAGAACGTGGTGGA 288748 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | |||| || ||| ||| |||||||| | ||||||||||| || || |||| Sbjct 288747 GAACTTTTGTAGTGAGGTGAGTGTGCCGGAGGCGCGCTGCTTTTACGGCTTCCAGATGGC 288688 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 ||| || ||| | ||| | || |||| ||||| |||||||| || ||| | ||| Sbjct 288687 CATCGAGAACATTCATGCCGAGGTGTACTCGCTGCTCATCGACACCTACATTCGCGACCG 288628 Query 57863 CGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCC-CGCGATCGCCAAGAAGG 57921 | |||||| | || || ||||| || | || |||| ||| || |||||| Sbjct 288627 CACCGAGAAGCACAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGTGCG-GGAGAAGG 288569 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | ||||| | || | || | || || ||| || || ||| | || | | Sbjct 288568 CGCAGTGGGCGATGCGCTACATGGACGGCAACATTTGCACCTTTGCTGAGCGCCTTGTTG 288509 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATG 58040 || |||||||| ||||| || |||||||| ||| || ||| || || |||||| | Sbjct 288508 GCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTCTGC-GCGATCTTTTGGCTC 288450 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| |||||||| ||||| ||||| || ||| ||||||| | || ||||||||| Sbjct 288449 AAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCGACGAG 288390 Query 58101 GGTCTCCATACTGATTTTGCGTGCCT 58126 || | || ||||| ||||| ||||| Sbjct 288389 GGCATGCACACTGACTTTGCTTGCCT 288364 >seq7 Length=852142 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || |||||||| |||||| | || || || || Sbjct 76802 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCT 76861 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| |||| || ||| ||||| ||| | || || || Sbjct 76862 TCGGACACTATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGAT 76921 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||||||||| ||| | || ||| || | ||||| || Sbjct 76922 CAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTAC 76981 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || || Sbjct 76982 AACATCCAGAAGGAGTCTACTCTCCACCTCGTGCT 77016 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||||||||| || ||||| || |||||| | || || || || || Sbjct 77033 ATGCAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77092 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| || ||| ||||| || | || || || ||| Sbjct 77093 GACACCATTGAGAACGTCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCAG 77152 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| || | ||||| || ||| Sbjct 77153 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAAC 77212 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || || || || Sbjct 77213 ATCCAGAAGGAGTCTACTCTCCACCTCGTGCT 77244 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || || || |||| || || || || Sbjct 77261 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77320 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| || ||||||||| || | || || || ||| Sbjct 77321 GACACCATTGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 77380 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| || | ||||| || ||| Sbjct 77381 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAAC 77440 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || || || || Sbjct 77441 ATCCAGAAGGAGTCTACTCTCCACCTTGTGCT 77472 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || || || |||| || || || || Sbjct 77717 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77776 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| || ||||||||| || | || || || ||| Sbjct 77777 GACACGATTGAGAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCAG 77836 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || || || | ||||| || ||| Sbjct 77837 CAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAAC 77896 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || ||||| || Sbjct 77897 ATCCAGAAGGAGTCTACGCTCCACCTGGTGCT 77928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || || || || || Sbjct 77489 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77548 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| |||| || ||| ||||| || | || || || ||| Sbjct 77549 GACACCATTGAGAACGTCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCAG 77608 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || ||| || | ||||| || ||| Sbjct 77609 CAGCGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 77668 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || || || || Sbjct 77669 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCT 77700 >seq49 Length=285000 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31196 CAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGAC 31255 || || ||||| ||||| || || ||||| || |||||| |||| || || || || ||| Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178 Query 31256 AGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAG 31315 | |||| | || || |||| || ||||||||| || | || ||||| |||||| Sbjct 148179 ACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAG 148238 Query 31316 CGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATT 31375 ||||| || ||||| ||||| ||| | || ||| || | ||||| || ||||| Sbjct 148239 CGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATC 148298 Query 31376 CAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || || || Sbjct 148299 CAGAAGGAGTCTACCCTCCACCTCGTGCT 148327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764605790240