Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq91 105 1e-17 >seq91 Length=99162 Score = 105 bits (116), Expect = 1e-17 Identities = 365/558 (65%), Gaps = 16/558 (3%) Strand=Plus/Plus Query 35152 CGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAA--ATGAGGTTCTCTCTT 35209 |||| | ||||| || || ||| | || | ||||| | ||| ||| | ||| ||| Sbjct 42461 CGATCGCACTGGCACTGGCACTTTGTCAACCTTTGG--CACAACGATGCGCTTCAGCCTT 42518 Query 35210 CGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAA 35269 || ||||||| || || ||||||| || ||| | || ||| | || || | || Sbjct 42519 CGTAACGACACCATCCCGCTTCTCACGACGAAGCGCGTCTTTTGGCGCGGCGTCGCCGAG 42578 Query 35270 GAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAA--GAAGA 35327 || || |||||||| ||| | || |||||| | || |||||| ||| | Sbjct 42579 GAGCTTCTTTGGTTCATGTCAGGCGACACGAGCGCCAAGACACTG--CAAGAAAAGAACA 42636 Query 35328 TACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATA 35387 | ||||| ||| | | |||||||| || |||| | | |||| | || | || Sbjct 42637 TCCACATTTGGGATGGCAATGGGTCCCGTGAATATCTCGACAAGATCGGCCTCACAGACC 42696 Query 35388 GAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAAT 35447 ||| || || || | || ||||| || || || || ||||| || |||||||| || | Sbjct 42697 GAGAGGAAGGCGACCTCGGCCCCGTCTATGGTTTTCAGTGGCGGCACTTTGGTGCGGACT 42756 Query 35448 ATGATACCTGTTCTTCCGATTA-TACT--GGAAAGGGTATTGATCAATTGGCCAATATAC 35504 | | | | | | |||| | |||| || |||||| | || || | || | | Sbjct 42757 AC-ACAACGATGCA--CGATGACTACTCGGGCAAGGGTGTCGACCAGCTTGCGCAGCTCG 42813 Query 35505 TAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 | | || | | ||| || || | ||| | | ||||| | |||| ||||| || Sbjct 42814 TGCACACGATTA-AGACCAACCCCAACGATCGTCGCATGATCCTCTCGGCGTGGAACCCG 42872 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCT 35623 | | ||||||||||||| ||||| || ||||||||| |||||| || ||||| | Sbjct 42873 GCTGCTTTTCACCTTATGGCGCTTCCGCCCTGCCACATGTTTGCTCAGTTCTATGTTTCC 42932 Query 35624 AATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCC 35683 || || || | |||||||| |||| ||||| || || | || | ||||||||| Sbjct 42933 AAGGGCGAGCTTTCGTGCCAAATGTACCAGCGTTCTGGTGACATTGGTCTTGGCGTGCCC 42992 Query 35684 TTCAATATTGCATCATAC 35701 || || ||||| || ||| Sbjct 42993 TTTAACATTGCCTCCTAC 43010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579917347510