Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq30 104 3e-17
>seq30
Length=443502
Score = 104 bits (114), Expect = 3e-17
Identities = 251/375 (67%), Gaps = 15/375 (4%)
Strand=Plus/Plus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
||||| |||||||| | || || | ||||| ||||| ||||| || ||||| |||||
Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
||||| || |||||||| || | ||| || || ||||||||||| ||||| || ||
Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGC 288500
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCA------TAACCGGCGCTGT-CATGTATCCACTTTT 33768
|||||| ||| ||| | ||| || || | || || |||||| | |
Sbjct 288501 GGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT--- 288557
Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828
||||| | ||||||| || || |||| || | |||||| || ||| ||
Sbjct 288558 -CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTGT 288616
Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888
|| || | | || || || || ||||| | || |||| || | |||||
Sbjct 288617 GCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGAA 288676
Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTGCACTTCT 33947
|||| || ||||||||||| || ||||| || || | |||| ||| | || ||| ||
Sbjct 288677 TGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACT-CACCTCA 288735
Query 33948 GTACAAAATCGTTCT 33962
||||||| |||||
Sbjct 288736 CTACAAAA--GTTCT 288748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629815064984160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |