Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq30 104 3e-17 >seq30 Length=443502 Score = 104 bits (114), Expect = 3e-17 Identities = 251/375 (67%), Gaps = 15/375 (4%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| |||||||| | || || | ||||| ||||| ||||| || ||||| ||||| Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || |||||||| || | ||| || || ||||||||||| ||||| || || Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGC 288500 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCA------TAACCGGCGCTGT-CATGTATCCACTTTT 33768 |||||| ||| ||| | ||| || || | || || |||||| | | Sbjct 288501 GGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT--- 288557 Query 33769 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33828 ||||| | ||||||| || || |||| || | |||||| || ||| || Sbjct 288558 -CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTGT 288616 Query 33829 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33888 || || | | || || || || ||||| | || |||| || | ||||| Sbjct 288617 GCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGAA 288676 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTGCACTTCT 33947 |||| || ||||||||||| || ||||| || || | |||| ||| | || ||| || Sbjct 288677 TGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACT-CACCTCA 288735 Query 33948 GTACAAAATCGTTCT 33962 ||||||| ||||| Sbjct 288736 CTACAAAA--GTTCT 288748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815064984160