Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq30 105 9e-18 seq61 86.0 8e-12 >seq30 Length=443502 Score = 105 bits (116), Expect = 9e-18 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 |||||||| | || || | ||||||||||| ||||| || ||||| ||||| ||||| Sbjct 288388 CCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTC 288447 Query 36239 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 36297 || |||||||| || | |||| || || ||||||||||| || ||||| || || ||||| Sbjct 288448 TTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCGGCAAA 288506 Query 36298 GGCAATAAGTCTCTC 36312 | ||| ||| | ||| Sbjct 288507 GCCAACAAGGCGCTC 288521 >seq61 Length=193651 Score = 86.0 bits (94), Expect = 8e-12 Identities = 300/463 (65%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || ||||| || | ||| | || |||| || | || | || ||| || | || || Sbjct 58092 CCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCG 58033 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 ||||| | || ||||| |||| | |||||||| || ||||| || || Sbjct 58032 TTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTG 57973 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGAT 66394 | ||| || || || || || ||||| ||||| ||| | | ||| | |||| Sbjct 57972 ACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCA-CGTCTCGAGCGTCTGGAAGAT 57914 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 66454 |||||| || || ||| |||||| | || || ||||| ||||| || | || Sbjct 57913 GCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCGCGG 57854 Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 || || || || || | || || | ||||||||||| | |||| || | | || Sbjct 57853 GGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCATGTT 57794 Query 66515 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| |||||||| || ||| || || | ||| || || || || | ||||||||| | Sbjct 57793 GTAGGTCTCAATGGCACGGTCAATGTCTTCCTTG-TGGATACCCACAGAGACACGCATGA 57735 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 ||| ||||| || | || | ||||||| ||| | || | || ||| || || | Sbjct 57734 GCATCTGCTGGGGGCGCTCGGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGCTCGA 57675 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 || || || ||||| |||| ||| ||||| || ||||| Sbjct 57674 GCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGCTCGTA 57632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170150854480