Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq91 100 2e-16 >seq91 Length=99162 Score = 100 bits (110), Expect = 2e-16 Identities = 272/414 (66%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || ||||| || ||||||| ||| ||| || | ||| | || || ||| Sbjct 43114 AGCGGCTCGACGTGATTTTTGTAAATGTGACAGTCGCCAATCACGTGAATGAATTCGCCC 43055 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 | | || ||| ||| | || | || | ||| || | ||||||| ||| |||||| Sbjct 43054 GCGCGCAAGCCTGTGCACTTTGCAAGGAGGTGCGTGAGCAAGGCGTAGGAGGCAATGTTA 42995 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || || || || ||||| | || | |||||||| ||||| || ||||| ||| Sbjct 42994 AAGGGCACGCCAAGACCAATGTCACCAGAACGCTGGTACATTTGGCACGAAAGCTCGCCC 42935 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 | || || |||||| || | ||| || || || || ||||| | | | Sbjct 42934 TTGGAAACATAGAACTGAGCAAACATGTGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCA 42875 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC 21224 || ||||||||||| | | | ||||| ||||||| ||| | ||||| | | Sbjct 42874 GCCGGGTTCCACGCCGAGAGGATCATGCGACGATCGTTGGGGTTGGTCTTAATCGTGTGC 42815 Query 21225 ACCACGTAACGC-AGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 || | | ||| |||||||| || |||| ||| ||||| ||| | |||| Sbjct 42814 ACGA-GCTGCGCAAGCTGGTCGACACCCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTA 42756 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTC 21337 ||||| ||||| || | |||||| || || || || || || || ||||| || Sbjct 42755 GTCCGCACCAAAGTGCCGCCACTGAAAACCATAGACGGGGCCGAGGTCGCCTTC 42702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774321246560