Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq30 93.3 3e-14 >seq30 Length=443502 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 22747 TTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCATATTCTG 22805 ||||| ||||| || || |||||| || | |||||||| || || |||| | || || || Sbjct 288511 TTGGC-TTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTCTGCG-CGATCTTTTG 288454 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||| ||||| || |||||||| || | | |||||||||||| | || ||||| || Sbjct 288453 GCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCGA 288394 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTG 22892 ||| || | ||| |||||||||||| Sbjct 288393 CGAGGGCATGCACACTGACTTTGCTTG 288367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232202005766