Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq30 134 2e-26 >seq30 Length=443502 Score = 134 bits (148), Expect = 2e-26 Identities = 255/369 (69%), Gaps = 15/369 (4%) Strand=Plus/Plus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| |||||||| | || || || ||||||||||| ||||| || ||||| ||||| Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 ||||| || |||||||| || | |||| || || |||||||||||||| ||||| || | Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGG 288499 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCA------TAACTGGCGCTGT-CATGTATCCACTTT 50145 |||||||| ||||||| | ||| || || || || || |||||| | | Sbjct 288500 CGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT-- 288557 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 ||||| | ||||||| || || |||| || | |||||| || ||| | Sbjct 288558 --CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTG 288615 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | || || | | || || || || ||||| | || |||| || | |||| Sbjct 288616 TGCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGA 288675 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTGCACTTC 50324 ||||| || ||||||||||| || ||||| || || | |||| ||| | || ||| || Sbjct 288676 ATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACT-CACCTC 288734 Query 50325 TGTACAAAA 50333 ||||||| Sbjct 288735 ACTACAAAA 288743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265908968080