Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq30 111 2e-19
seq61 84.2 3e-11
>seq30
Length=443502
Score = 111 bits (122), Expect = 2e-19
Identities = 288/437 (66%), Gaps = 13/437 (3%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
||||| ||||| || | || || | ||||||||||| ||||| || ||||| |||||
Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197
||||| || |||||||| || | |||| || || |||||||||||||| ||||| || |
Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGG 288499
Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT-------CATGTATCCACTTT 42250
| |||||| ||| ||| | ||| || | | | ||| |||||| | |
Sbjct 288500 CGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT-- 288557
Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310
||||| | ||||||| || || |||| || | |||||| || ||| |
Sbjct 288558 --CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTG 288615
Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370
| || || | | || || || || ||||| | || |||| || | ||||
Sbjct 288616 TGCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGA 288675
Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
||||| || ||||||||||| || ||||| || || | ||||| | || || ||
Sbjct 288676 ATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACTCACCTCA 288735
Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490
||||||| || | | || ||| || || ||||| || ||||| ||||||
Sbjct 288736 CTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAAGCAAAGAACGCC 288795
Query 42491 AATACATGTTTTATAAA 42507
| || || || | |||
Sbjct 288796 AGCACGTGCTTGACAAA 288812
>seq61
Length=193651
Score = 84.2 bits (92), Expect = 3e-11
Identities = 327/509 (64%), Gaps = 4/509 (1%)
Strand=Plus/Minus
Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191
|||||| || || | ||| ||||| | ||| || ||| || ||||| || |
Sbjct 58138 ATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 58079
Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251
||| | || |||| || | || | || ||| || | || || ||||| || ||
Sbjct 58078 GTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTT 58019
Query 72252 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311
||| |||| | |||||||| || ||||| ||| || | ||| || || ||
Sbjct 58018 GGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCC 57959
Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTAT 72370
|| || ||||| ||||| ||| | | ||| | |||||||||| || |
Sbjct 57958 GGCGTACTTGGAGATGCGCGCGCA-CGTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGT 57900
Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430
| ||| |||||| | || || ||||| ||||| || | || || || || || |
Sbjct 57899 CGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGA 57840
Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490
| | || || | ||||||||||| | |||| |||| | ||||| |||||||| |
Sbjct 57839 AGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGG 57780
Query 72491 CTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549
| || || || | ||| || || || || | ||||||||| | ||| ||||| ||
Sbjct 57779 CACGGTCAATGTCTTCCTTG-TGGATACCCACAGAGACACGCATGAGCATCTGCTGGGGG 57721
Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609
| || | ||||||| || | || | || ||| || || | || || || |||
Sbjct 57720 CGCTCGGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCA 57661
Query 72610 AAATAGTTGTATGAAAAGTCTCGTTCGTA 72638
|| |||| ||| ||||| || |||||
Sbjct 57660 AAGTAGTCGTACTCGAAGTCGCGCTCGTA 57632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671136498664720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |