Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq30 111 2e-19 seq61 84.2 3e-11 >seq30 Length=443502 Score = 111 bits (122), Expect = 2e-19 Identities = 288/437 (66%), Gaps = 13/437 (3%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| ||||| || | || || | ||||||||||| ||||| || ||||| ||||| Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 ||||| || |||||||| || | |||| || || |||||||||||||| ||||| || | Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGG 288499 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT-------CATGTATCCACTTT 42250 | |||||| ||| ||| | ||| || | | | ||| |||||| | | Sbjct 288500 CGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT-- 288557 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| | ||||||| || || |||| || | |||||| || ||| | Sbjct 288558 --CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTG 288615 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | || || | | || || || || ||||| | || |||| || | |||| Sbjct 288616 TGCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGA 288675 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || ||||||||||| || ||||| || || | ||||| | || || || Sbjct 288676 ATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACTCACCTCA 288735 Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 ||||||| || | | || ||| || || ||||| || ||||| |||||| Sbjct 288736 CTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAAGCAAAGAACGCC 288795 Query 42491 AATACATGTTTTATAAA 42507 | || || || | ||| Sbjct 288796 AGCACGTGCTTGACAAA 288812 >seq61 Length=193651 Score = 84.2 bits (92), Expect = 3e-11 Identities = 327/509 (64%), Gaps = 4/509 (1%) Strand=Plus/Minus Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191 |||||| || || | ||| ||||| | ||| || ||| || ||||| || | Sbjct 58138 ATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCAC 58079 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251 ||| | || |||| || | || | || ||| || | || || ||||| || || Sbjct 58078 GTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTT 58019 Query 72252 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 ||| |||| | |||||||| || ||||| ||| || | ||| || || || Sbjct 58018 GGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCC 57959 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTAT 72370 || || ||||| ||||| ||| | | ||| | |||||||||| || | Sbjct 57958 GGCGTACTTGGAGATGCGCGCGCA-CGTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGT 57900 Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | ||| |||||| | || || ||||| ||||| || | || || || || || | Sbjct 57899 CGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGA 57840 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 | | || || | ||||||||||| | |||| |||| | ||||| |||||||| | Sbjct 57839 AGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGG 57780 Query 72491 CTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549 | || || || | ||| || || || || | ||||||||| | ||| ||||| || Sbjct 57779 CACGGTCAATGTCTTCCTTG-TGGATACCCACAGAGACACGCATGAGCATCTGCTGGGGG 57721 Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609 | || | ||||||| || | || | || ||| || || | || || || ||| Sbjct 57720 CGCTCGGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCA 57661 Query 72610 AAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 || |||| ||| ||||| || ||||| Sbjct 57660 AAGTAGTCGTACTCGAAGTCGCGCTCGTA 57632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136498664720