Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq7 96.9 4e-15
seq49 84.2 2e-11
>seq7
Length=852142
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
||||| || || || |||||||| ||||| | |||| ||| ||||| || || |||
Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||| ||||| |||||||| || || || || || || || ||| || || ||
Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTG 77110
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||||| || || || |||| || | ||||||||||| | ||
Sbjct 77109 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTC 77050
Query 143168 TTTACGAATATTTGCATA 143185
||||| || || ||||||
Sbjct 77049 TTTACAAAAATCTGCATA 77032
>seq49
Length=285000
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
||||| || || || |||||||| ||||| | |||| ||| ||||| || || ||
Sbjct 148312 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 148253
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||| ||||| ||||||||||| || || || || ||||| || || || ||
Sbjct 148252 GCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 148193
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||||| ||| || || || | || | |||||||| || | ||
Sbjct 148192 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTC 148133
Query 143168 TTTACGAATATTTG 143181
|| ||||| || ||
Sbjct 148132 TTGACGAAGATCTG 148119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507012359267040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |