Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 4e-15 seq49 84.2 2e-11 >seq7 Length=852142 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||| ||||| | |||| ||| ||||| || || ||| Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| |||||||| || || || || || || || ||| || || || Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTG 77110 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| || || || |||| || | ||||||||||| | || Sbjct 77109 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTC 77050 Query 143168 TTTACGAATATTTGCATA 143185 ||||| || || |||||| Sbjct 77049 TTTACAAAAATCTGCATA 77032 >seq49 Length=285000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||| ||||| | |||| ||| ||||| || || || Sbjct 148312 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 148253 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||||||||| || || || || ||||| || || || || Sbjct 148252 GCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 148193 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| ||| || || || | || | |||||||| || | || Sbjct 148192 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTC 148133 Query 143168 TTTACGAATATTTG 143181 || ||||| || || Sbjct 148132 TTGACGAAGATCTG 148119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012359267040