Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq30 165 1e-35 seq29 107 3e-18 >seq30 Length=443502 Score = 165 bits (182), Expect = 1e-35 Identities = 576/883 (65%), Gaps = 26/883 (3%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || || || ||||| |||||| ||||| ||||||| || Sbjct 288944 CTGTTCCCTATCCAGCACCAGGATATCTGGGACGCGTACAAGAAGGCCGAGGCCTCGTTC 288885 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| || |||||||| ||| | |||| | | ||| | || |||| | ||| Sbjct 288884 TGGACGGCTGAGGAGGTCGACCTGGGCCAGGATCAGCGCGACTTTGA--CTCGAT-GACC 288828 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | |||| | ||| | |||| | |||| |||||||| ||| || || ||| Sbjct 288827 AAGGGCGAGCAGCACTTTGTCAAGCACGTGCTGGCGTTCTTTGCTTCCTCGGACGGCATC 288768 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 ||| ||| || || || || | | ||| ||| | || |||| | ||| Sbjct 288767 GTCCTCGAGAACGTGGTGGAGAACTTTTGTAGTGAGGTGAGTGTGCCGGAGGCGCGCTGC 288708 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 |||||||| ||||| || || |||||| | || | || ||||||| || || Sbjct 288707 TTTTACGGCTTCCAGATGGCCATCGAGAACATTCATGCCGAGGTGTACTCGCTGCTCATC 288648 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGGT 125353 |||| ||||||||||| ||||| || || |||| || || || || | || | Sbjct 288647 GACACCTACATTCGCGA-CCGCACCGAGAAGCACAGTCTTTTCAATGCCCTTACGACTTT 288589 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 ||||| | || | ||||| || |||| ||| || | || || | | ||| | | Sbjct 288588 GCCGTGCGTGCGGGAGAAGGCGCAGTGGGCGATGCGCTACATGGACGGCAACATTTGCAC 288529 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 | || || | || || | || |||||||| || |||||||||||||| || ||| Sbjct 288528 CTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTT 288469 Query 125474 -TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| | ||||||||||||||||||||||| |||||||| || || || |||| Sbjct 288468 CTGCG-CGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACG 288410 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACT 125592 || | || || ||||||||| | ||| ||||||||| || || || ||||| Sbjct 288409 AGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCTTCCGCAA-G 288351 Query 125593 ATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCC 125651 || || |||| | || || ||| || ||||| | || || ||| Sbjct 288350 CTCCGCCACCCGCCCTCGGAGGCCCGCGTGCGCGAGATCATCGA----GT---CG--GCC 288300 Query 125652 GTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAA 125710 || || || ||||| | |||| | || || ||| ||| | || |||||||| Sbjct 288299 GTCGACATTGAGTGCGAGTTCATCTCCGACGCGCTCCCCGTCGAGC-TTATCGGCATGAA 288241 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGAT 125770 || | || ||| ||||||| |||||||||| || ||| ||| | ||| | | Sbjct 288240 CTCTACCCTCATGCAGCAGTACATCAAGTTTGTGGCTGACCGT---CTGGTCAAGTCGCT 288184 Query 125771 TGGCCGCAAG---ATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACT 125827 ||| ||| |||||| || | || |||||||| | ||| | ||| || | Sbjct 288183 CGGCTTTAAGGCCATTTACGGCGTGCAAAACCCCTTTGACTGGATGGACCTCATCTCGAT 288124 Query 125828 AGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||| |||||||||||||| || ||| || |||||||| Sbjct 288123 GCAGGGCAAGACCAACTTTTTTGAAAAGCGCGTTGGCGAGTAC 288081 >seq29 Length=456269 Score = 107 bits (118), Expect = 3e-18 Identities = 253/378 (67%), Gaps = 12/378 (3%) Strand=Plus/Plus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| || ||||| |||||||| || |||||| || || |||||||| | ||||||| Sbjct 214369 GAAGCCATGCGTAAGGTGGCCACCCGAGGGCAGGTCAAGACCCATGATGCGGTCGTGCGG 214428 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | || | ||| | ||||||||||||| ||| || |||||| || Sbjct 214429 GCGCAGGACGGCGGTGAAGGCGGCAAAGTTGGCTGGCGATCCACTGTACGGCGCCACGTT 214488 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||| ||||| || |||||| | | |||| |||| |||| | ||| | Sbjct 214489 CACGCCCCACTCCTCCTCGTTAAGCCGGTACGCCTTGAGTGCGCGCTTCA-TGCACATGG 214547 Query 127623 T-TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCG 127681 | |||| | || || | || ||| ||||| ||||| |||||||||||| | ||||| | Sbjct 214548 TCTCGACCTGGTCAATGATCTGGTTGCCACCGTAGTAACGCTTTCCGGGCATGCCCTCGG 214607 Query 127682 AGTACTTGTTGATGAGACACGAACTCA-----TGCATTCTCGCACCGGTAGAGTGGTAAA 127736 ||||||||| |||| || | || |||| || | |||| || ||||| Sbjct 214608 CATACTTGTTGGTGAGGCAGCTTCCCAGAGTCTGCA---TCACCGCGGTCGA--CGTAAA 214662 Query 127737 GTTTTCCGATGCGATCAACTCTAAGCCTGCCCGTTGCCGATCGGCCTCTTGCTCTACGAG 127796 ||| || ||||||| ||| | ||| | || ||||| |||||||| ||||| | || Sbjct 214663 GTTCTCGCTGGCGATCAGCTCGAGGCCGCCGCGCTGCCGCTCGGCCTCCTGCTCGAGAAG 214722 Query 127797 CGCATACAGCTCGGGATC 127814 ||| ||||||| || || Sbjct 214723 CGCGAACAGCTCCGGGTC 214740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056217236720