Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 111 4e-19 seq53 95.1 3e-14 >seq7 Length=852142 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || | ||||| || || || || ||| Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| |||||||| || || || || |||||||||||||| ||| || Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGC-TT 77111 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || ||| || || || || || || ||||| || || || || Sbjct 77110 GACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGT 77051 Query 104542 TTTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 77050 CTTTACAAAAATCTGCAT 77033 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || | ||||| || || || || ||| Sbjct 77457 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77398 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| |||||||| || || || || || ||||||||||| ||||| Sbjct 77397 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTG 77338 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || || || || || || ||||||||||| ||||| || || Sbjct 77337 -ACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGT 77279 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 77278 CTTGACAAAGATCTGCAT 77261 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || | || || || || || || ||| Sbjct 77913 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCA 77854 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || ||||| || | ||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 77853 GCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTG 77794 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || || || || || ||||||||||| ||||| || || Sbjct 77793 -ACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGT 77735 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 77734 CTTGACAAAGATCTGCAT 77717 >seq53 Length=241909 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || || | ||||| Sbjct 193429 AAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 193370 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| |||||||| || || || || || || Sbjct 193369 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTC 193310 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| || || || || || || || || | Sbjct 193309 CTGAATCTTCTGC-TTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGG 193251 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||||||| || || || |||||||| ||||| Sbjct 193250 TCTTACCCGTGAGGGTCTTTACAAAGATCTG 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393649761976