Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 seq53 89.7 4e-13 >seq7 Length=852142 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || || || ||||||| |||||||| || || Sbjct 77224 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 77166 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| || | || ||||| ||| ||| |||||||||| Sbjct 77165 AGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGT 77106 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| || | || ||| || | || ||||| || ||||||||||| || | Sbjct 77105 TCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTA 77046 Query 48714 CAAAAATCTGCAT 48726 ||||||||||||| Sbjct 77045 CAAAAATCTGCAT 77033 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || || || ||||||| |||||||| || || Sbjct 77452 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 77394 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| || | || ||||||||| ||| |||||||||| Sbjct 77393 AGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGT 77334 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| || | | ||| |||| || || || || || || ||||| || | Sbjct 77333 TCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGA 77274 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 77273 CAAAGATCTGCAT 77261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || ||| || | ||||| |||||||| || || Sbjct 77908 CTCCTTCTGGATGTTGTAGTC-GCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGA 77850 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| | |||||||||||| || | || ||||||||| || |||||||||| Sbjct 77849 AAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGT 77790 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | || || || | | ||| |||| || || || || || || ||||| || | Sbjct 77789 TCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGA 77730 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 77729 CAAAGATCTGCAT 77717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || || || ||||||| |||||||| || || Sbjct 76996 CTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGA 76938 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||||||| || | | ||||| ||| || |||||||||| Sbjct 76937 AGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGT 76878 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | || || || | || ||| || | || |||||||| || ||||| || || | Sbjct 76877 TCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAA 76818 Query 48714 CAAAAATCTGCATCGTG 48730 | || ||||||||| || Sbjct 76817 CGAAGATCTGCATCTTG 76801 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | || || ||||||| ||||| Sbjct 77691 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTGAGCGTGCGGCCGTCCTCGAGCTG 77633 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| || | || ||||| ||| || || Sbjct 77632 CTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTT 77573 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||||| | | ||||| || | || ||| || | || ||||| || || || Sbjct 77572 CTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGT 77513 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 77512 GAGGGTCTTGACGAAGATCTGCAT 77489 >seq53 Length=241909 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || | || || ||||||| ||||| Sbjct 193419 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTC-GCTGAGCGTGCGGCCGTCCTCGAGCTG 193361 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||||| || | || ||||||||| ||| || Sbjct 193360 CTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTT 193301 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | | ||||| || | | ||| |||| || ||||| ||||| || Sbjct 193300 CTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGT 193241 Query 48703 GAGAGTTTTCACAAAAATCTG 48723 ||| || || ||||| ||||| Sbjct 193240 GAGGGTCTTTACAAAGATCTG 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249546852322