Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq58 149 1e-31 seq74 96.9 5e-16 >seq58 Length=217732 Score = 149 bits (164), Expect = 1e-31 Identities = 181/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| || || |||||||| || | |||||||| || | Sbjct 29759 CGCCAAGCGCCACCGCA-AGGTCTTGCGCGACAACATCCAGGGTGTGACCAAGCCGGCCA 29701 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || ||||| || ||||||||| |||| || | |||| || |||| Sbjct 29700 TCCGCCGTCTGGCCCGCCGTGGCGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGA 29641 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| |||||||| ||| ||| |||| || ||| | ||| |||| Sbjct 29640 CGCGCGGCGTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCTGTTACCTACACCG 29581 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || |||||||| ||| |||||||| | ||||| || | || || || | Sbjct 29580 AGCACGCTCGCCGCAAGACTGTTACCGCCATGGATGTTGTCTACGCTCTCAAGCGCCAGG 29521 Query 16671 GCCG 16674 |||| Sbjct 29520 GCCG 29517 >seq74 Length=161160 Score = 96.9 bits (106), Expect = 5e-16 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || | || || || || || Sbjct 160864 CGCGAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCGTGACGAAACCGGCCAT 160923 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| || || || || || ||||| |||| || | |||| || |||| Sbjct 160924 CCGCAGGCTGGCGCGCCGCGGGGGTGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 160983 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 160984 GCGCGGCGTGCTCAAGGTCTTTCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 161043 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| | || || || ||||| | ||||| Sbjct 161044 GCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTGGTGTACGCTCTGAAAAGACAAGG 161103 Query 16672 CCG 16674 ||| Sbjct 161104 CCG 161106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074905593146