Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq30 120 4e-22
>seq30
Length=443502
Score = 120 bits (132), Expect = 4e-22
Identities = 291/437 (67%), Gaps = 13/437 (3%)
Strand=Plus/Plus
Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377
||||| |||||||| | || || || ||||||||||| ||||| || ||||| |||||
Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440
Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437
||||| || |||||||| || | ||| || |||||||||||||| ||||| || ||
Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGC 288500
Query 33438 AGCAAAGGCAATAAGTCTCTCTCCA------TAACCGGCGCTGT-CATGTATCCACTTTT 33490
|||||| ||| ||| | ||| || || | || || |||||| | |
Sbjct 288501 GGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT--- 288557
Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550
||||| | ||||||| || || |||| || | |||||| || ||| ||
Sbjct 288558 -CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTGT 288616
Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610
|| || | | || || || || ||||| | || |||| || | |||||
Sbjct 288617 GCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGAA 288676
Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTGTACTTCT 33669
|||| || ||||||||||| || ||||| || || | |||| ||| | || || ||
Sbjct 288677 TGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACT-CACCTCA 288735
Query 33670 GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33729
||||||| ||| ||| || || || || ||||| || ||||| ||||||
Sbjct 288736 CTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAAGCAAAGAACGCC 288795
Query 33730 AATACATGTTTTATAAA 33746
| || || || | |||
Sbjct 288796 AGCACGTGCTTGACAAA 288812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622944692637520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |