Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq30 120 4e-22 >seq30 Length=443502 Score = 120 bits (132), Expect = 4e-22 Identities = 291/437 (67%), Gaps = 13/437 (3%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| |||||||| | || || || ||||||||||| ||||| || ||||| ||||| Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || |||||||| || | ||| || |||||||||||||| ||||| || || Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGC 288500 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCA------TAACCGGCGCTGT-CATGTATCCACTTTT 33490 |||||| ||| ||| | ||| || || | || || |||||| | | Sbjct 288501 GGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATGTAGCGCAT--- 288557 Query 33491 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 33550 ||||| | ||||||| || || |||| || | |||||| || ||| || Sbjct 288558 -CGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTGT 288616 Query 33551 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 33610 || || | | || || || || ||||| | || |||| || | ||||| Sbjct 288617 GCTTCTCGGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGCGAGTACACCTCGGCATGAA 288676 Query 33611 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT-CGGTAATCTGTACTTCT 33669 |||| || ||||||||||| || ||||| || || | |||| ||| | || || || Sbjct 288677 TGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACT-CACCTCA 288735 Query 33670 GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 33729 ||||||| ||| ||| || || || || ||||| || ||||| |||||| Sbjct 288736 CTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAAGCAAAGAACGCC 288795 Query 33730 AATACATGTTTTATAAA 33746 | || || || | ||| Sbjct 288796 AGCACGTGCTTGACAAA 288812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944692637520