Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq53 96.9 3e-15 seq61 95.1 1e-14 seq49 86.0 6e-12 >seq53 Length=241909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 |||||||| || | || || || | |||||| |||| | || | ||||||||| Sbjct 193226 TTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGACACCATC 193285 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 ||| | || || || |||||| ||||| || || || || || ||||| || | ||| Sbjct 193286 GAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAGCGCCTC 193345 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | || |||||| || ||||| || | | | |||||||||| ||||| || || Sbjct 193346 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATCCAGAAG 193405 Query 26958 GAATCTACTATCCATCTGGTCCT 26980 || || || |||| |||||||| Sbjct 193406 GAGTCCACCCTCCACCTGGTCCT 193428 >seq61 Length=193651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGC-GACAGCTACGCAATGAGGGTAAAATTCA 71730 ||| |||||||||| |||||||| || ||| || || |||| | || || ||||| || Sbjct 81007 ACGAATGATGAACTTTGGAATGCGGCACAGGTGATGGC-ACGCGACGAAGGCAAAATGCA 80949 Query 71731 CGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCA 71790 ||| | || |||||||||||||| || || ||||| |||||| | || || || | Sbjct 80948 CGGGTGGCTGCGCATGTACTGGGCAAAGCAGCTTCTCACCTGGACTAAGACGCCGGAAGA 80889 Query 71791 GGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAA 71850 ||| ||||| || || || ||||| | |||| || ||||| |||||||||| Sbjct 80888 GGCACTCGACTACGGCTTTCGGCTCAACGACATTTACAACCTTGACGGCGGCGATCCTAA 80829 Query 71851 C 71851 | Sbjct 80828 C 80828 >seq49 Length=285000 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || ||||| ||||| || || || || |||||||| Sbjct 148176 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAG 148235 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | |||||||||| ||| Sbjct 148236 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 148295 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || ||||| |||| || || || Sbjct 148296 ATCCAGAAGGAGTCTACCCTCCACCTCGTGCT 148327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478660473383840