Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq53 96.9 3e-15
seq61 95.1 1e-14
seq49 86.0 6e-12
>seq53
Length=241909
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837
|||||||| || | || || || | |||||| |||| | || | |||||||||
Sbjct 193226 TTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGACACCATC 193285
Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897
||| | || || || |||||| ||||| || || || || || ||||| || | |||
Sbjct 193286 GAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAGCGCCTC 193345
Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957
|| | || |||||| || ||||| || | | | |||||||||| ||||| || ||
Sbjct 193346 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATCCAGAAG 193405
Query 26958 GAATCTACTATCCATCTGGTCCT 26980
|| || || |||| ||||||||
Sbjct 193406 GAGTCCACCCTCCACCTGGTCCT 193428
>seq61
Length=193651
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGC-GACAGCTACGCAATGAGGGTAAAATTCA 71730
||| |||||||||| |||||||| || ||| || || |||| | || || ||||| ||
Sbjct 81007 ACGAATGATGAACTTTGGAATGCGGCACAGGTGATGGC-ACGCGACGAAGGCAAAATGCA 80949
Query 71731 CGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCA 71790
||| | || |||||||||||||| || || ||||| |||||| | || || || |
Sbjct 80948 CGGGTGGCTGCGCATGTACTGGGCAAAGCAGCTTCTCACCTGGACTAAGACGCCGGAAGA 80889
Query 71791 GGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAA 71850
||| ||||| || || || ||||| | |||| || ||||| ||||||||||
Sbjct 80888 GGCACTCGACTACGGCTTTCGGCTCAACGACATTTACAACCTTGACGGCGGCGATCCTAA 80829
Query 71851 C 71851
|
Sbjct 80828 C 80828
>seq49
Length=285000
Score = 86.0 bits (94), Expect = 6e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||||||| | || || || ||||| ||||| || || || || ||||||||
Sbjct 148176 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAG 148235
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | ||||| | || |||||| || ||||| || | | | |||||||||| |||
Sbjct 148236 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 148295
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || || ||||| |||| || || ||
Sbjct 148296 ATCCAGAAGGAGTCTACCCTCCACCTCGTGCT 148327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478660473383840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |