Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq61 363 4e-95 seq91 129 2e-24 seq30 96.9 9e-15 seq4 91.5 4e-13 >seq61 Length=193651 Score = 363 bits (402), Expect = 4e-95 Identities = 1074/1639 (66%), Gaps = 44/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || |||||||||||||| || | | ||| || || || | || |||||||| Sbjct 57815 TTTACGCACGCCACGCCCACGCTCTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGC 57874 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | ||||||||||| || || ||||| ||||| | || || ||| Sbjct 57875 TGCTTCCTCGTGCACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACG 57934 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || | || |||||| | || ||||| |||||||| |||||||| |||| || Sbjct 57935 TGCGCGCGCATCTCCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCGCT 57994 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | || ||| | |||||| || | || || || | || |||||||| || Sbjct 57995 TCGGGAAGCTACGTGGCCGGCACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGC 58054 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || || || | || || | ||||| |||||||| || || |||||||| || | ||| Sbjct 58055 GTCTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTT 58114 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || ||||| || ||||| |||||||| | || ||| |||||||||| || ||| Sbjct 58115 GCCATGTACCTTGAGCCCTGGCATGCCGACGTCGAAGACTTTATTGAGCTCCGCAAGAAC 58174 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| || || || || || || || || || ||||| |||||| | Sbjct 58175 CACGGTAAGGAGGAGAACCGCGCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTT 58234 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||| ||||||| ||||| | | ||| | ||||||||||| |||| | ||| Sbjct 58235 TTCATGGAGCGCGTCGAGGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGA--GGCCA 58292 Query 364027 --GGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATC 364082 || || || || || | || ||||| | | | |||| ||||| || || Sbjct 58293 AGGGGCTCTCGGACGTCTATGGCGACGAGTTCAAGGAGCTC--TACGAGCGCTACGAGAA 58350 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCA---TCATGGA 364139 |||||| | ||| ||||| || | ||| ||| | || ||| | ||| || | Sbjct 58351 GGAGGGTCGCGGTCGCAAGACGATGCGCGCCCAGGACCTCTGG--TACCAGATTCTCAGC 58408 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 | | ||||| ||||| || |||| |||| | | ||| || | |||||||||||||| Sbjct 58409 TGC-CAGATCGAGACGGGTGTGCCCTTTATGCTTTTCAAGGACGCATGCAACCGCAAGTC 58467 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 |||||| || ||||||| | || || ||||| || || ||||| || || || Sbjct 58468 GAACCAGAAGAACCTTGGCATCATCAAGTCCTCGAACCTCTGCACGGAGATCATCGAGTA 58527 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 ||| || || || ||| || || || ||||| || |||||| |||| |||||| Sbjct 58528 CACTGCCCCGGATGAGGTCGCTGTTTGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGT 58587 Query 364320 AA------AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373 | |||| || || | |||| ||| || ||||| || ||| | || || Sbjct 58588 CAACATCGAAGAGGGCACCTATGACTTTCAGGGCCTCTATGATGTCACCAAAGTTGTGAC 58647 Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433 || || || ||||| ||| || | ||| || | || |||||||| Sbjct 58648 CAAGAACCTAAACCGCGTTATTGACGGCAACTTTTACCCCGTCGAGGAGGCCGAGCGCAG 58707 Query 364434 TAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGAT 364493 || ||||| || ||||| | || ||||||||||||||||||| ||| | | ||| Sbjct 58708 CAACATGCGCCACCGCCCTGTCGGCATTGGTGTACAGGGCCTCGCCAACGCTCTCATGGA 58767 Query 364494 GCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAAC 364553 ||| | ||||| || || || || | || || ||||| || || Sbjct 58768 GCTTCGCTACCCGTTTGAGAGCCCGGAGGCGCGCAAATTGAACCGTGACATCTTCGAGAC 58827 Query 364554 AATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTC 364613 || || |||| ||| || || ||||| || |||| || |||| | ||| Sbjct 58828 CATTTACTTTGGCGCCTGCACCGCCTCGTGCGAGCTGGCCAAGGAGGAGGGCCATTACGA 58887 Query 364614 TACTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCA 364672 | | | ||| || || | | || |||| || |||||||||||||| ||||| | | Sbjct 58888 GTCCTTTCCGGGCTCGCC-CATGAGCGAGGGCAAGTTCCAGTTTGATCTCTGGAACGAGA 58946 Query 364673 CGCC--ATCTG----TCCGATGGAACTGGGATACGCTACGTTCCA--ACGTTAAGAAGCA 364724 ||| | | | || | ||| ||||||| || || || ||| | || | | |||| Sbjct 58947 AGCCGAACCCGGAGCTCGGCTGGGACTGGGAGACTCTTCG--CCAGGATGTCATGCAGCA 59004 Query 364725 TGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCT 364784 || || ||||| ||| || ||||||||||||||||| || ||| | ||||| || Sbjct 59005 CGGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAGATTCT 59064 Query 364785 CGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTC 364844 ||||||| |||| ||| || || ||||| ||||| | || || ||||| ||||| | Sbjct 59065 CGGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTTCTCGC 59124 Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904 ||| || || || ||||| | |||| |||||||| || | ||||| || || Sbjct 59125 CGGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGCCTCTG 59184 Query 364905 GGGTGACAGCATGA-----AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 ||| || ||| ||| | ||||| |||| | ||||| ||||||||||| Sbjct 59185 ----GAC-GCCTGAGATTCGCAACCACATCATGGCCGATCGCGGTTCGGTGCAGAACATC 59239 Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGA 365019 | | | || || || || ||| | ||||||| || || ||||| || ||| Sbjct 59240 TCCGTCATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGATCAAGCAGCGT 59299 Query 365020 ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC 365079 |||||||| | |||||||| || ||||| ||||| ||| |||||| | ||| Sbjct 59300 TGCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTATTGACCAGTCGCAGTCGCTCAAC 59359 Query 365080 GTATTCATGACTCA-GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | | |||| | | |||||| | | |||||| || || || || ||| |||||| Sbjct 59360 ATTTACATGGCCGAGGCCAACGT-TGGCAAGCTCACTTCGTGCCACTTTTACTCGTGGAA 59418 Query 365139 ATCCGGTCTTAAGACAGGT 365157 ||| || ||||| ||| Sbjct 59419 GCGCGGCCTCAAGACGGGT 59437 >seq91 Length=99162 Score = 129 bits (142), Expect = 2e-24 Identities = 250/364 (69%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAA 111485 ||||||||||| ||||| || ||||| | ||| || | || || ||| || Sbjct 42642 ATTTGGGATGGCAATGGGTCCCGTGAATATCTCGACAAGATCGGCCTCACAGACCGAGAG 42701 Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 ||||| || ||||| || || || || ||||| ||||| ||||||||||| ||||||| | Sbjct 42702 GAAGGCGACCTCGGCCCCGTCTATGGTTTTCAGTGGCGGCACTTTGGTGCGGACTACACA 42761 Query 111546 ACCATGCACGACTCATA-TGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604 || |||||||| || | || |||| || || | | | || | | Sbjct 42762 ACGATGCACGATGACTACTCGGGCA-AGGGTGTCGACCAGCTTGCGCAGCTCGTGCACAC 42820 Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664 ||||||| |||||| | ||||||||| || | || |||||||| ||| || Sbjct 42821 GATTAAGACCAACCCCAACGATCGTCGCATGATCCTCTCGGCGTGGAACCCGGCTGCTTT 42880 Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGA 111723 | ||||| ||||| || || || | | | ||| ||||| ||||| | | || Sbjct 42881 TCACCTTATGGCGCTTCCGCCCTGCCA-CATGTTTGCTCAGTTCTATGTTTCCAAGGGCG 42939 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 |||||| ||||||||||| ||||| |||| ||| ||||||||||| || || ||||| | Sbjct 42940 AGCTTTCGTGCCAAATGTACCAGCGTTCTGGTGACATTGGTCTTGGCGTGCCCTTTAACA 42999 Query 111784 TTGC 111787 |||| Sbjct 43000 TTGC 43003 >seq30 Length=443502 Score = 96.9 bits (106), Expect = 9e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 || || || || ||| ||| ||||| | || |||||||| ||||||||||| | || Sbjct 288527 TTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTC 288468 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 || || ||||||||||| || || || | | |||||||| || || ||||| || ||| Sbjct 288467 TGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAG 288408 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | || ||||| || ||||| | || || || ||||| || Sbjct 288407 CTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTG 288367 >seq4 Length=1168988 Score = 91.5 bits (100), Expect = 4e-13 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 145539 TCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAA-CACTTCTTCGTCTGGATC 145597 ||||| || || |||||||||||||| | || ||||| ||| ||| |||||| || Sbjct 545985 TCATCCGAGAAACCAGTTCCGATCTTTGTGATGCTCTGGAAGCAC-TCTAGGTCTGGGTC 545927 Query 145598 ATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACC--GGTATAC 145655 ||| ||||||| ||| |||||||| || ||||| || ||||| ||||| || || | Sbjct 545926 ATAGCAAGCAAGAACGTAGGCACCATAGACGCCAGTTCGCTTTCCACGACCGTGGAATGC 545867 Query 145656 CCCGCAATTGGTACAAGATCACAACTA-TCACCCATTCCGGCAAGATAATCCTTTTTAAG 145714 ||| || || || || || |||| | || | | | ||||| |||||||| || Sbjct 545866 GCCG--ATAGGCACGAGGTC-CAACGAGTCGGCGAGGTTGTTGAGATAGTCCTTTTTCAG 545810 Query 145715 TTTTAGCCAATTGAGA 145730 ||| ||||| |||||| Sbjct 545809 TTTGAGCCAGTTGAGA 545794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348222851804