Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq61 363 4e-95
seq91 129 2e-24
seq30 96.9 9e-15
seq4 91.5 4e-13
>seq61
Length=193651
Score = 363 bits (402), Expect = 4e-95
Identities = 1074/1639 (66%), Gaps = 44/1639 (3%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
|| |||||||||||||| || | | ||| || || || | || ||||||||
Sbjct 57815 TTTACGCACGCCACGCCCACGCTCTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGC 57874
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | ||||||||||| || || ||||| ||||| | || || |||
Sbjct 57875 TGCTTCCTCGTGCACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACG 57934
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726
|| || | || |||||| | || ||||| |||||||| |||||||| |||| ||
Sbjct 57935 TGCGCGCGCATCTCCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCGCT 57994
Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786
| || ||| | |||||| || | || || || | || |||||||| ||
Sbjct 57995 TCGGGAAGCTACGTGGCCGGCACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGC 58054
Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846
|| || || | || || | ||||| |||||||| || || |||||||| || | |||
Sbjct 58055 GTCTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTT 58114
Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906
|| ||||| || ||||| |||||||| | || ||| |||||||||| || |||
Sbjct 58115 GCCATGTACCTTGAGCCCTGGCATGCCGACGTCGAAGACTTTATTGAGCTCCGCAAGAAC 58174
Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966
|| || ||||| || || || || || || || || || ||||| |||||| |
Sbjct 58175 CACGGTAAGGAGGAGAACCGCGCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTT 58234
Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026
|| ||| ||||||| ||||| | | ||| | ||||||||||| |||| | |||
Sbjct 58235 TTCATGGAGCGCGTCGAGGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGA--GGCCA 58292
Query 364027 --GGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATC 364082
|| || || || || | || ||||| | | | |||| ||||| || ||
Sbjct 58293 AGGGGCTCTCGGACGTCTATGGCGACGAGTTCAAGGAGCTC--TACGAGCGCTACGAGAA 58350
Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCA---TCATGGA 364139
|||||| | ||| ||||| || | ||| ||| | || ||| | ||| || |
Sbjct 58351 GGAGGGTCGCGGTCGCAAGACGATGCGCGCCCAGGACCTCTGG--TACCAGATTCTCAGC 58408
Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199
| | ||||| ||||| || |||| |||| | | ||| || | ||||||||||||||
Sbjct 58409 TGC-CAGATCGAGACGGGTGTGCCCTTTATGCTTTTCAAGGACGCATGCAACCGCAAGTC 58467
Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259
|||||| || ||||||| | || || ||||| || || ||||| || || ||
Sbjct 58468 GAACCAGAAGAACCTTGGCATCATCAAGTCCTCGAACCTCTGCACGGAGATCATCGAGTA 58527
Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319
||| || || || ||| || || || ||||| || |||||| |||| ||||||
Sbjct 58528 CACTGCCCCGGATGAGGTCGCTGTTTGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGT 58587
Query 364320 AA------AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTAC 364373
| |||| || || | |||| ||| || ||||| || ||| | || ||
Sbjct 58588 CAACATCGAAGAGGGCACCTATGACTTTCAGGGCCTCTATGATGTCACCAAAGTTGTGAC 58647
Query 364374 TTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTC 364433
|| || || ||||| ||| || | ||| || | || ||||||||
Sbjct 58648 CAAGAACCTAAACCGCGTTATTGACGGCAACTTTTACCCCGTCGAGGAGGCCGAGCGCAG 58707
Query 364434 TAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGAT 364493
|| ||||| || ||||| | || ||||||||||||||||||| ||| | | |||
Sbjct 58708 CAACATGCGCCACCGCCCTGTCGGCATTGGTGTACAGGGCCTCGCCAACGCTCTCATGGA 58767
Query 364494 GCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAAC 364553
||| | ||||| || || || || | || || ||||| || ||
Sbjct 58768 GCTTCGCTACCCGTTTGAGAGCCCGGAGGCGCGCAAATTGAACCGTGACATCTTCGAGAC 58827
Query 364554 AATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTC 364613
|| || |||| ||| || || ||||| || |||| || |||| | |||
Sbjct 58828 CATTTACTTTGGCGCCTGCACCGCCTCGTGCGAGCTGGCCAAGGAGGAGGGCCATTACGA 58887
Query 364614 TACTTATGAGGGGTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGGAATGTCA 364672
| | | ||| || || | | || |||| || |||||||||||||| ||||| | |
Sbjct 58888 GTCCTTTCCGGGCTCGCC-CATGAGCGAGGGCAAGTTCCAGTTTGATCTCTGGAACGAGA 58946
Query 364673 CGCC--ATCTG----TCCGATGGAACTGGGATACGCTACGTTCCA--ACGTTAAGAAGCA 364724
||| | | | || | ||| ||||||| || || || ||| | || | | ||||
Sbjct 58947 AGCCGAACCCGGAGCTCGGCTGGGACTGGGAGACTCTTCG--CCAGGATGTCATGCAGCA 59004
Query 364725 TGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCT 364784
|| || ||||| ||| || ||||||||||||||||| || ||| | ||||| ||
Sbjct 59005 CGGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAGATTCT 59064
Query 364785 CGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTC 364844
||||||| |||| ||| || || ||||| ||||| | || || ||||| ||||| |
Sbjct 59065 CGGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTTCTCGC 59124
Query 364845 CGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTG 364904
||| || || || ||||| | |||| |||||||| || | ||||| || ||
Sbjct 59125 CGGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGCCTCTG 59184
Query 364905 GGGTGACAGCATGA-----AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959
||| || ||| ||| | ||||| |||| | ||||| |||||||||||
Sbjct 59185 ----GAC-GCCTGAGATTCGCAACCACATCATGGCCGATCGCGGTTCGGTGCAGAACATC 59239
Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGA 365019
| | | || || || || ||| | ||||||| || || ||||| || |||
Sbjct 59240 TCCGTCATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGATCAAGCAGCGT 59299
Query 365020 ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC 365079
|||||||| | |||||||| || ||||| ||||| ||| |||||| | |||
Sbjct 59300 TGCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTATTGACCAGTCGCAGTCGCTCAAC 59359
Query 365080 GTATTCATGACTCA-GCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138
| | |||| | | |||||| | | |||||| || || || || ||| ||||||
Sbjct 59360 ATTTACATGGCCGAGGCCAACGT-TGGCAAGCTCACTTCGTGCCACTTTTACTCGTGGAA 59418
Query 365139 ATCCGGTCTTAAGACAGGT 365157
||| || ||||| |||
Sbjct 59419 GCGCGGCCTCAAGACGGGT 59437
>seq91
Length=99162
Score = 129 bits (142), Expect = 2e-24
Identities = 250/364 (69%), Gaps = 4/364 (1%)
Strand=Plus/Plus
Query 111426 ATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAA 111485
||||||||||| ||||| || ||||| | ||| || | || || ||| ||
Sbjct 42642 ATTTGGGATGGCAATGGGTCCCGTGAATATCTCGACAAGATCGGCCTCACAGACCGAGAG 42701
Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545
||||| || ||||| || || || || ||||| ||||| ||||||||||| ||||||| |
Sbjct 42702 GAAGGCGACCTCGGCCCCGTCTATGGTTTTCAGTGGCGGCACTTTGGTGCGGACTACACA 42761
Query 111546 ACCATGCACGACTCATA-TGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCA 111604
|| |||||||| || | || |||| || || | | | || | |
Sbjct 42762 ACGATGCACGATGACTACTCGGGCA-AGGGTGTCGACCAGCTTGCGCAGCTCGTGCACAC 42820
Query 111605 AATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATT 111664
||||||| |||||| | ||||||||| || | || |||||||| ||| ||
Sbjct 42821 GATTAAGACCAACCCCAACGATCGTCGCATGATCCTCTCGGCGTGGAACCCGGCTGCTTT 42880
Query 111665 GGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGA 111723
| ||||| ||||| || || || | | | ||| ||||| ||||| | | ||
Sbjct 42881 TCACCTTATGGCGCTTCCGCCCTGCCA-CATGTTTGCTCAGTTCTATGTTTCCAAGGGCG 42939
Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783
|||||| ||||||||||| ||||| |||| ||| ||||||||||| || || ||||| |
Sbjct 42940 AGCTTTCGTGCCAAATGTACCAGCGTTCTGGTGACATTGGTCTTGGCGTGCCCTTTAACA 42999
Query 111784 TTGC 111787
||||
Sbjct 43000 TTGC 43003
>seq30
Length=443502
Score = 96.9 bits (106), Expect = 9e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542
|| || || || ||| ||| ||||| | || |||||||| ||||||||||| | ||
Sbjct 288527 TTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTC 288468
Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602
|| || ||||||||||| || || || | | |||||||| || || ||||| || |||
Sbjct 288467 TGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAG 288408
Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643
| || ||||| || ||||| | || || || ||||| ||
Sbjct 288407 CTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTG 288367
>seq4
Length=1168988
Score = 91.5 bits (100), Expect = 4e-13
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 145539 TCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAA-CACTTCTTCGTCTGGATC 145597
||||| || || |||||||||||||| | || ||||| ||| ||| |||||| ||
Sbjct 545985 TCATCCGAGAAACCAGTTCCGATCTTTGTGATGCTCTGGAAGCAC-TCTAGGTCTGGGTC 545927
Query 145598 ATACACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACC--GGTATAC 145655
||| ||||||| ||| |||||||| || ||||| || ||||| ||||| || || |
Sbjct 545926 ATAGCAAGCAAGAACGTAGGCACCATAGACGCCAGTTCGCTTTCCACGACCGTGGAATGC 545867
Query 145656 CCCGCAATTGGTACAAGATCACAACTA-TCACCCATTCCGGCAAGATAATCCTTTTTAAG 145714
||| || || || || || |||| | || | | | ||||| |||||||| ||
Sbjct 545866 GCCG--ATAGGCACGAGGTC-CAACGAGTCGGCGAGGTTGTTGAGATAGTCCTTTTTCAG 545810
Query 145715 TTTTAGCCAATTGAGA 145730
||| ||||| ||||||
Sbjct 545809 TTTGAGCCAGTTGAGA 545794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303348222851804
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