Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq53 100 2e-16 seq49 96.9 3e-15 seq1 84.2 2e-11 >seq53 Length=241909 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 |||||||| || | || || || | || ||| |||| |||||| || ||||||||| Sbjct 193226 TTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGACACCATC 193285 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 ||| | || || || |||||| ||||| || || || || || ||||| ||| | || Sbjct 193286 GAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAGCGCCTC 193345 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | || ||||||||| ||||| || | | | | ||||||| || ||||| || || Sbjct 193346 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATCCAGAAG 193405 Query 24180 GAATCTAC 24187 || || || Sbjct 193406 GAGTCCAC 193413 >seq49 Length=285000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| || |||||||||||| | || || || ||||| ||| Sbjct 148152 ATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAACGTGAAGCAGAAGATCCAGGAC 148211 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || |||||||| ||| | || || | || ||||||||| ||||| || Sbjct 148212 AAGGAGGGTATCCCCCCCGATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 148271 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | ||||||| || ||||| || || || ||||| Sbjct 148272 GGCCGCACGCTCAGCGACTACAACATCCAGAAGGAGTCTAC 148312 >seq1 Length=1674554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| || |||||||||||| | || || || ||||| ||| Sbjct 772174 ATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAGGAC 772233 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 ||||| || || || || ||||| ||| | || || | || ||||||||| || || || Sbjct 772234 AAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGAC 772293 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | ||||| || ||||| || || || || || Sbjct 772294 GGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCAC 772334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934312769910