Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq53 100 2e-16
seq49 96.9 3e-15
seq1 84.2 2e-11
>seq53
Length=241909
Score = 100 bits (110), Expect = 2e-16
Identities = 135/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059
|||||||| || | || || || | || ||| |||| |||||| || |||||||||
Sbjct 193226 TTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGACACCATC 193285
Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119
||| | || || || |||||| ||||| || || || || || ||||| ||| | ||
Sbjct 193286 GAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAGCGCCTC 193345
Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179
|| | || ||||||||| ||||| || | | | | ||||||| || ||||| || ||
Sbjct 193346 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATCCAGAAG 193405
Query 24180 GAATCTAC 24187
|| || ||
Sbjct 193406 GAGTCCAC 193413
>seq49
Length=285000
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| |||||| || |||||||||||| | || || || ||||| |||
Sbjct 148152 ATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAACGTGAAGCAGAAGATCCAGGAC 148211
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || || || || |||||||| ||| | || || | || ||||||||| ||||| ||
Sbjct 148212 AAGGAGGGTATCCCCCCCGATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 148271
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | | | ||||||| || ||||| || || || |||||
Sbjct 148272 GGCCGCACGCTCAGCGACTACAACATCCAGAAGGAGTCTAC 148312
>seq1
Length=1674554
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| |||||| || |||||||||||| | || || || ||||| |||
Sbjct 772174 ATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAGGAC 772233
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
||||| || || || || ||||| ||| | || || | || ||||||||| || || ||
Sbjct 772234 AAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGAC 772293
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | | | | ||||| || ||||| || || || || ||
Sbjct 772294 GGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCAC 772334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429934312769910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |