Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 6e-13 seq89 82.4 9e-11 >seq1 Length=1674554 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 || ||||| |||| || || |||||||| ||||| || || | | ||| |||| Sbjct 1397182 TCTTTGCCGCCCTGCAGACGGGTGCCAAATTGACCAGAGGGGAACAGAAGCGGCAGATTG 1397123 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCG 126327 || ||| ||||||||||| || | |||| || ||| | ||| |||||||||| Sbjct 1397122 TTACTTCCGACAAAGTCCTGGGCCATGTTGATGATCGTCGCATACAATGACTGCTCGCCG 1397063 Query 126328 TGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGA 126379 || | || ||||||||||| | ||||||||| |||||||| || |||| Sbjct 1397062 TGATGATAAGCGGTCTGCTCGCCGACGTAGCCGGCAAGCTGCGCGACTTTGA 1397011 >seq89 Length=119694 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15059 GGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAG 15118 |||||||||||| |||| || | ||||||||| |||| | |||||| || ||| Sbjct 24786 GGCGACAAGTTTGCCTCTCGTCACGGGCAAAAGGGTGTGTGCAGTGTGATTTGGCCGCAG 24727 Query 15119 GAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGC 15178 || |||||||| ||||| | ||| |||||| | || || | || |||||||| | | Sbjct 24726 GAGGACATGCCGTTTACGGAGTCGGGCATGTCCCCGGATACCATTATCAACCCGCATGCC 24667 Query 15179 ATCCCGTCCCGCATGACCAT 15198 | || || |||||||| || Sbjct 24666 TTTCCCTCGCGCATGACGAT 24647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611389539147200