Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 6e-13
seq89 82.4 9e-11
>seq1
Length=1674554
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267
|| ||||| |||| || || |||||||| ||||| || || | | ||| ||||
Sbjct 1397182 TCTTTGCCGCCCTGCAGACGGGTGCCAAATTGACCAGAGGGGAACAGAAGCGGCAGATTG 1397123
Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCG 126327
|| ||| ||||||||||| || | |||| || ||| | ||| ||||||||||
Sbjct 1397122 TTACTTCCGACAAAGTCCTGGGCCATGTTGATGATCGTCGCATACAATGACTGCTCGCCG 1397063
Query 126328 TGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGA 126379
|| | || ||||||||||| | ||||||||| |||||||| || ||||
Sbjct 1397062 TGATGATAAGCGGTCTGCTCGCCGACGTAGCCGGCAAGCTGCGCGACTTTGA 1397011
>seq89
Length=119694
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15059 GGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAG 15118
|||||||||||| |||| || | ||||||||| |||| | |||||| || |||
Sbjct 24786 GGCGACAAGTTTGCCTCTCGTCACGGGCAAAAGGGTGTGTGCAGTGTGATTTGGCCGCAG 24727
Query 15119 GAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGC 15178
|| |||||||| ||||| | ||| |||||| | || || | || |||||||| | |
Sbjct 24726 GAGGACATGCCGTTTACGGAGTCGGGCATGTCCCCGGATACCATTATCAACCCGCATGCC 24667
Query 15179 ATCCCGTCCCGCATGACCAT 15198
| || || |||||||| ||
Sbjct 24666 TTTCCCTCGCGCATGACGAT 24647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611389539147200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |