Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq30 105 8e-18 >seq30 Length=443502 Score = 105 bits (116), Expect = 8e-18 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 |||||||| | || || | ||||||||||| ||||| || ||||| ||||| ||||| Sbjct 288388 CCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTC 288447 Query 32742 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 32800 || |||||||| || | |||| || || ||||||||||| || ||||| || || ||||| Sbjct 288448 TTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCGGCAAA 288506 Query 32801 GGCAATAAGTCTCTC 32815 | ||| ||| | ||| Sbjct 288507 GCCAACAAGGCGCTC 288521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629449631200