Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq61 118 2e-21 seq22 116 8e-21 seq30 89.7 1e-12 seq27 86.0 1e-11 seq38 84.2 4e-11 >seq1 Length=1674554 Score = 154 bits (170), Expect = 3e-32 Identities = 350/522 (67%), Gaps = 6/522 (1%) Strand=Plus/Plus Query 218531 AGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATG 218590 ||||||||||||| || || | ||| | ||| ||||||||| |||| |||| Sbjct 1192555 AGGAGCTCATTCTGTTTTCCATGGCTGACAACGTGCGCAGCATTCCCAGCATGGTCGATG 1192614 Query 218591 GCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG-GTTCAA 218649 |||||||||| ||||| || ||| | || | | || ||||| || ||| | || Sbjct 1192615 GCCTCAAGCCCTCGCAACGCAAGGTACTTTACTCGTGCTTTAAGCGCAAGCTGCGCTCT- 1192673 Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 || || |||||||| ||| || ||| || || || ||| || | ||||| |||||| Sbjct 1192674 GACATCAAGGTCGCCCAGCTTGTTGGCTACGTGTCGGAACACTCGGCGTACCACCACGGT 1192733 Query 218710 GAGCAGAGTCTGCAGGGTG--CCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767 || || || || | | || ||||||| || || ||| ||| |||| Sbjct 1192734 GA--AGTTTCGCTTTCGTCGACGGTCGTCAGCATGGCGCAAACCTTTGTTGGCTCCAACA 1192791 Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATA 218827 |||| ||| |||| |||||| ||| || ||||| || || | | || ||||||||| Sbjct 1192792 ACATCAACCTGCTCTTCCCCAGCGGCCAATTTGGCTCGCGCATTCTCGGCGGAAAGGATG 1192851 Query 218828 GTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC 218887 ||| |||||| | || || || || | |||| | |||||| || | ||| || Sbjct 1192852 CTGCGTCTGCCCGTTACATTTTCACGCGTCTCGCGCCTCTCACGCGCAAGCTCTTCCATG 1192911 Query 218888 AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGT 218947 || ||| |||| |||||| | || || |||||||||||| || || |||||| ||| Sbjct 1192912 AGCACGACGATGCGCTCCTCGACTACCTCGAGGACGATGGTCAGTCTATCGAGCCCAAGT 1192971 Query 218948 GGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGT 219007 |||| ||| | | || | | ||| | |||||| | | ||||| || || || | Sbjct 1192972 ACTATGCGCCGGTCGTGCCCATGGTCCTCATCAATGGTTCGCAAGGTATTGGCACGGGCT 1193031 Query 219008 TCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTG 219049 || |||||||| | ||||| || |||| |||||| Sbjct 1193032 GGTCCACGGACATTCCCTGCTACAACCCGCGGGACCTCATTG 1193073 Score = 104 bits (114), Expect = 5e-17 Identities = 202/297 (68%), Gaps = 5/297 (2%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| | |||||||| |||||||||||| | ||||| | |||||| | ||| Sbjct 1396872 GAGTTCATCAATCAGGAGCTCGTTCTTTTCTCGCAGCATGATCTCGAGCGTAGCGTGCCC 1396931 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 | | ||||||||||||| || |||||||| ||| |||| || || || | ||||| Sbjct 1396932 TCGGCGTTGGATGGCCTCAAACCGTCGCAGCGCAAGGTCCTTTTCGCTGCGCTGAAGCGA 1396991 Query 218638 AACCT----GGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 || || ||| ||| | || ||||| ||| || | || || || ||| | Sbjct 1396992 AATCTCACATCTTC-AGAGCTCAAAGTCGCGCAGCTTGCCGGCTACGTCGGCGAGCAGAC 1397050 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | || |||||||| |||||| || | | | || | |||||| ||||||| Sbjct 1397051 CGCTTATCATCACGGCGAGCAGTCATTGTATGCGACGATCATCAACATGGCCCAGGACTT 1397110 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 ||| || |||||||| || | ||| ||||| ||||| ||||| | ||||| Sbjct 1397111 TGTCGGAAGTAACAATCTGCCGCTTCTGTTCCCCTCTGGTCAATTTGGCACCCGTCT 1397167 >seq61 Length=193651 Score = 118 bits (130), Expect = 2e-21 Identities = 300/445 (67%), Gaps = 20/445 (4%) Strand=Plus/Minus Query 294198 CTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCG 294257 ||| ||||||| |||||| || ||| |||||| | |||||||| | || ||| ||||| Sbjct 58252 CTCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGCGCGCG 58193 Query 294258 CAGGCTCTCCTC---ACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATG 294314 | ||||||| ||| || || ||||| | ||||| || ||||| ||| Sbjct 58192 ---GTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCATG 58136 Query 294315 ATGGGGTTCCAGATACACAGCAAAGGACCCCTTCC---TGCGTCCCCCCTGGTTGGCGTA 294371 ||| || || |||| |||||||| ||||| | ||| || ||||||| |||| Sbjct 58135 CCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 58076 Query 294372 GGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGT 294431 | | ||| || || || |||||| ||||||||||| | ||||| || ||||| Sbjct 58075 GCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTGGT 58016 Query 294432 TCCGCGAATCTCAGCCCCGCG-CCCGCGAATGTCGCTCATGTGGAGACCAATGCCACCGC 294490 ||| | | ||| | || ||||||||| | |||| || ||||||||| ||| Sbjct 58015 GCCG-GCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCGG 57957 Query 294491 CATACTTGGACAACTGGGC-AACGTCTCCAAGGCACTTGAAGATGTCGGAAAGAGAGTCA 294549 | |||||||| | | || |||||| | || || ||||||| | || ||||| Sbjct 57956 CGTACTTGGAGATGCGCGCGCACGTCT-CGAGCGTCTGGAAGATGCCCTCAATCGAGTCG 57898 Query 294550 T--TGCA-GTGAACCAGGAAGCAGCTTGCCAGGTTTGCCTTCTTGAAG--CCAGCATTGA 294604 | | || ||| || ||||||||||| | || | ||| | | | || || |||| Sbjct 57897 TCCTTCATGTGCACGAGGAAGCAGCTCGACA--TCTGCGGGCGCGGGGTACCGGCGTTGA 57840 Query 294605 AAAGAGTGGGACTCGCGTGGGTAAA 294629 | || ||||| | ||||| ||||| Sbjct 57839 AGAGCGTGGGCGTGGCGTGCGTAAA 57815 >seq22 Length=604378 Score = 116 bits (128), Expect = 8e-21 Identities = 424/655 (65%), Gaps = 34/655 (5%) Strand=Plus/Plus Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782 |||||||| || || || ||||| || | |||||| |||| || | |||||| Sbjct 221578 ATGAAGCTCGCTCTTACCGTGGCCATGCTCCGTAAGGCCGATATCCTCCTCATGGATGAG 221637 Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838 || ||||||||| ||||| |||||| ||| | || |||||| | | || Sbjct 221638 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTCGACTACCTCATGGGCGAG 221697 Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896 | || ||||| || | || ||||||||||| || ||| | ||||| || ||| Sbjct 221698 CCCTGCAAGAACGTGACCTCGCTCATTGTCTCGCATGACACCAAGTTCCTCGACAACGTC 221757 Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956 | | ||| || |||| ||| | || |||||| ||| ||| ||||||||| Sbjct 221758 GCCACCCACATTATCCACTTTGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 221814 Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013 || ||||| | ||||| || || || || ||||| || || | || Sbjct 221815 TCCAAGTTCGTCG---AGCGCTTCCCCGAAGCCAAGGCGTACTACGATCTCA------CC 221865 Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067 || ||||| || | ||||| |||| || ||| || || ||| || ||| Sbjct 221866 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCTGGTCCTCTCGACGGTGTCAAGTCCAAG 221925 Query 280068 GATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA---- 280123 | |||| | |||||| | || |||||| || | ||||| | || || Sbjct 221926 GGTCGCCCCATCATGTCCATGACTGACGTCTCGTTCACCTATCCGGGTTGCGAGAAGCCC 221985 Query 280124 CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACC 280183 || || |||| ||||| | || || ||| ||| || |||| | | || | Sbjct 221986 CAGCTCGAGCACA-TCAACGTCCGTGTCTCGATGGCCTCGCGCATTGCCTGCGTCGGTGC 222044 Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243 ||| ||||| || ||||| ||| | ||||| | || || |||||| | || || | | Sbjct 222045 CAACGGTGCTGGCAAGTCCACCATGATCAAGCTTCTTACCGGCGAGTTCAAGCCCTCGCA 222104 Query 280244 GGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCACGCTTTCC 280302 || || | | ||||| || ||| ||| | | || |||||||| ||||| || |||| Sbjct 222105 CGGTACCATCTTCAAGCACCCGAAC-TGCAAGTTCGCGTACGTCGCCCAGCATGCCTTCC 222163 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||||||||| | || || |||| ||| | ||| | ||||||||||||||||| Sbjct 222164 ACCACATCGAGCAGCATCTCGACAAGACCGCCAACGAGTACATTCAGTGGCGCTA 222218 Score = 116 bits (128), Expect = 8e-21 Identities = 424/655 (65%), Gaps = 34/655 (5%) Strand=Plus/Minus Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782 |||||||| || || || ||||| || | |||||| |||| || | |||||| Sbjct 278817 ATGAAGCTCGCTCTTACCGTGGCCATGCTCCGTAAGGCCGATATCCTCCTCATGGATGAG 278758 Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838 || ||||||||| ||||| |||||| ||| | || |||||| | | || Sbjct 278757 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTCGACTACCTCATGGGCGAG 278698 Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896 | || ||||| || | || ||||||||||| || ||| | ||||| || ||| Sbjct 278697 CCCTGCAAGAACGTGACCTCGCTCATTGTCTCGCATGACACCAAGTTCCTCGACAACGTC 278638 Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956 | | ||| || |||| ||| | || |||||| ||| ||| ||||||||| Sbjct 278637 GCCACCCACATTATCCACTTTGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 278581 Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013 || ||||| | ||||| || || || || ||||| || || | || Sbjct 278580 TCCAAGTTCGTCG---AGCGCTTCCCCGAAGCCAAGGCGTACTACGATCTCA------CC 278530 Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067 || ||||| || | ||||| |||| || ||| || || ||| || ||| Sbjct 278529 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCTGGTCCTCTCGACGGTGTCAAGTCCAAG 278470 Query 280068 GATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA---- 280123 | |||| | |||||| | || |||||| || | ||||| | || || Sbjct 278469 GGTCGCCCCATCATGTCCATGACTGACGTCTCGTTCACCTATCCGGGTTGCGAGAAGCCC 278410 Query 280124 CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACC 280183 || || |||| ||||| | || || ||| ||| || |||| | | || | Sbjct 278409 CAGCTCGAGCACA-TCAACGTCCGTGTCTCGATGGCCTCGCGCATTGCCTGCGTCGGTGC 278351 Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243 ||| ||||| || ||||| ||| | ||||| | || || |||||| | || || | | Sbjct 278350 CAACGGTGCTGGCAAGTCCACCATGATCAAGCTTCTTACCGGCGAGTTCAAGCCCTCGCA 278291 Query 280244 GGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCACGCTTTCC 280302 || || | | ||||| || ||| ||| | | || |||||||| ||||| || |||| Sbjct 278290 CGGTACCATCTTCAAGCACCCGAAC-TGCAAGTTCGCGTACGTCGCCCAGCATGCCTTCC 278232 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||||||||| | || || |||| ||| | ||| | ||||||||||||||||| Sbjct 278231 ACCACATCGAGCAGCATCTCGACAAGACCGCCAACGAGTACATTCAGTGGCGCTA 278177 >seq30 Length=443502 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||||||||| ||||||| ||||||||| | ||||| ||||| | || Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 || ||| ||||||| ||||| ||||| || || ||||| || | | || || || Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGC 288500 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990 | | ||||||||||||||||||| Sbjct 288501 GGCAAAGCCAACAAGGCGCTCAGCAAA 288527 >seq27 Length=462098 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||||||||||||| |||||||||| | ||||||||||| | |||||| |||||||| || Sbjct 379610 CCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGATCC 379552 Query 142565 CCACATCGGGCAGA 142578 || ||| ||| ||| Sbjct 379551 CCTCATTGGGAAGA 379538 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 || |||||||||||||| |||||||||| | ||||||||||| | |||||| |||||||| Sbjct 376637 TATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGA 376579 Query 142562 GCCCCACATCGGG 142574 |||| ||| ||| Sbjct 376578 TCCCCTCATTGGG 376566 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 || |||||||||||||| |||||||||| | ||||||||||| | |||||| |||||||| Sbjct 377348 TATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGA 377290 Query 142562 GCCCCACATCGGG 142574 |||| ||| ||| Sbjct 377289 TCCCCTCATTGGG 377277 >seq38 Length=335856 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 || |||||||||||||| |||||||||| | ||||||||||| | |||||| |||||||| Sbjct 206865 TATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGA 206807 Query 142562 GCCCCACATCGGG 142574 |||| ||| ||| Sbjct 206806 TCCCCTCATTGGG 206794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832559530802