Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 3e-32
seq61 118 2e-21
seq22 116 8e-21
seq30 89.7 1e-12
seq27 86.0 1e-11
seq38 84.2 4e-11
>seq1
Length=1674554
Score = 154 bits (170), Expect = 3e-32
Identities = 350/522 (67%), Gaps = 6/522 (1%)
Strand=Plus/Plus
Query 218531 AGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATG 218590
||||||||||||| || || | ||| | ||| ||||||||| |||| ||||
Sbjct 1192555 AGGAGCTCATTCTGTTTTCCATGGCTGACAACGTGCGCAGCATTCCCAGCATGGTCGATG 1192614
Query 218591 GCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG-GTTCAA 218649
|||||||||| ||||| || ||| | || | | || ||||| || ||| | ||
Sbjct 1192615 GCCTCAAGCCCTCGCAACGCAAGGTACTTTACTCGTGCTTTAAGCGCAAGCTGCGCTCT- 1192673
Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709
|| || |||||||| ||| || ||| || || || ||| || | ||||| ||||||
Sbjct 1192674 GACATCAAGGTCGCCCAGCTTGTTGGCTACGTGTCGGAACACTCGGCGTACCACCACGGT 1192733
Query 218710 GAGCAGAGTCTGCAGGGTG--CCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767
|| || || || | | || ||||||| || || ||| ||| ||||
Sbjct 1192734 GA--AGTTTCGCTTTCGTCGACGGTCGTCAGCATGGCGCAAACCTTTGTTGGCTCCAACA 1192791
Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATA 218827
|||| ||| |||| |||||| ||| || ||||| || || | | || |||||||||
Sbjct 1192792 ACATCAACCTGCTCTTCCCCAGCGGCCAATTTGGCTCGCGCATTCTCGGCGGAAAGGATG 1192851
Query 218828 GTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC 218887
||| |||||| | || || || || | |||| | |||||| || | ||| ||
Sbjct 1192852 CTGCGTCTGCCCGTTACATTTTCACGCGTCTCGCGCCTCTCACGCGCAAGCTCTTCCATG 1192911
Query 218888 AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGT 218947
|| ||| |||| |||||| | || || |||||||||||| || || |||||| |||
Sbjct 1192912 AGCACGACGATGCGCTCCTCGACTACCTCGAGGACGATGGTCAGTCTATCGAGCCCAAGT 1192971
Query 218948 GGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGT 219007
|||| ||| | | || | | ||| | |||||| | | ||||| || || || |
Sbjct 1192972 ACTATGCGCCGGTCGTGCCCATGGTCCTCATCAATGGTTCGCAAGGTATTGGCACGGGCT 1193031
Query 219008 TCAGTACTGACATTCCTTCTTACAATCCCAAGGACATCATTG 219049
|| |||||||| | ||||| || |||| ||||||
Sbjct 1193032 GGTCCACGGACATTCCCTGCTACAACCCGCGGGACCTCATTG 1193073
Score = 104 bits (114), Expect = 5e-17
Identities = 202/297 (68%), Gaps = 5/297 (2%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|| |||||| | |||||||| |||||||||||| | ||||| | |||||| | |||
Sbjct 1396872 GAGTTCATCAATCAGGAGCTCGTTCTTTTCTCGCAGCATGATCTCGAGCGTAGCGTGCCC 1396931
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
| | ||||||||||||| || |||||||| ||| |||| || || || | |||||
Sbjct 1396932 TCGGCGTTGGATGGCCTCAAACCGTCGCAGCGCAAGGTCCTTTTCGCTGCGCTGAAGCGA 1396991
Query 218638 AACCT----GGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693
|| || ||| ||| | || ||||| ||| || | || || || ||| |
Sbjct 1396992 AATCTCACATCTTC-AGAGCTCAAAGTCGCGCAGCTTGCCGGCTACGTCGGCGAGCAGAC 1397050
Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753
| || |||||||| |||||| || | | | || | |||||| |||||||
Sbjct 1397051 CGCTTATCATCACGGCGAGCAGTCATTGTATGCGACGATCATCAACATGGCCCAGGACTT 1397110
Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810
||| || |||||||| || | ||| ||||| ||||| ||||| | |||||
Sbjct 1397111 TGTCGGAAGTAACAATCTGCCGCTTCTGTTCCCCTCTGGTCAATTTGGCACCCGTCT 1397167
>seq61
Length=193651
Score = 118 bits (130), Expect = 2e-21
Identities = 300/445 (67%), Gaps = 20/445 (4%)
Strand=Plus/Minus
Query 294198 CTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCG 294257
||| ||||||| |||||| || ||| |||||| | |||||||| | || ||| |||||
Sbjct 58252 CTCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGCGCGCG 58193
Query 294258 CAGGCTCTCCTC---ACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATG 294314
| ||||||| ||| || || ||||| | ||||| || ||||| |||
Sbjct 58192 ---GTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCATG 58136
Query 294315 ATGGGGTTCCAGATACACAGCAAAGGACCCCTTCC---TGCGTCCCCCCTGGTTGGCGTA 294371
||| || || |||| |||||||| ||||| | ||| || ||||||| ||||
Sbjct 58135 CCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTA 58076
Query 294372 GGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGT 294431
| | ||| || || || |||||| ||||||||||| | ||||| || |||||
Sbjct 58075 GCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTGGT 58016
Query 294432 TCCGCGAATCTCAGCCCCGCG-CCCGCGAATGTCGCTCATGTGGAGACCAATGCCACCGC 294490
||| | | ||| | || ||||||||| | |||| || ||||||||| |||
Sbjct 58015 GCCG-GCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCGG 57957
Query 294491 CATACTTGGACAACTGGGC-AACGTCTCCAAGGCACTTGAAGATGTCGGAAAGAGAGTCA 294549
| |||||||| | | || |||||| | || || ||||||| | || |||||
Sbjct 57956 CGTACTTGGAGATGCGCGCGCACGTCT-CGAGCGTCTGGAAGATGCCCTCAATCGAGTCG 57898
Query 294550 T--TGCA-GTGAACCAGGAAGCAGCTTGCCAGGTTTGCCTTCTTGAAG--CCAGCATTGA 294604
| | || ||| || ||||||||||| | || | ||| | | | || || ||||
Sbjct 57897 TCCTTCATGTGCACGAGGAAGCAGCTCGACA--TCTGCGGGCGCGGGGTACCGGCGTTGA 57840
Query 294605 AAAGAGTGGGACTCGCGTGGGTAAA 294629
| || ||||| | ||||| |||||
Sbjct 57839 AGAGCGTGGGCGTGGCGTGCGTAAA 57815
>seq22
Length=604378
Score = 116 bits (128), Expect = 8e-21
Identities = 424/655 (65%), Gaps = 34/655 (5%)
Strand=Plus/Plus
Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782
|||||||| || || || ||||| || | |||||| |||| || | ||||||
Sbjct 221578 ATGAAGCTCGCTCTTACCGTGGCCATGCTCCGTAAGGCCGATATCCTCCTCATGGATGAG 221637
Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838
|| ||||||||| ||||| |||||| ||| | || |||||| | | ||
Sbjct 221638 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTCGACTACCTCATGGGCGAG 221697
Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896
| || ||||| || | || ||||||||||| || ||| | ||||| || |||
Sbjct 221698 CCCTGCAAGAACGTGACCTCGCTCATTGTCTCGCATGACACCAAGTTCCTCGACAACGTC 221757
Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956
| | ||| || |||| ||| | || |||||| ||| ||| |||||||||
Sbjct 221758 GCCACCCACATTATCCACTTTGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 221814
Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013
|| ||||| | ||||| || || || || ||||| || || | ||
Sbjct 221815 TCCAAGTTCGTCG---AGCGCTTCCCCGAAGCCAAGGCGTACTACGATCTCA------CC 221865
Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067
|| ||||| || | ||||| |||| || ||| || || ||| || |||
Sbjct 221866 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCTGGTCCTCTCGACGGTGTCAAGTCCAAG 221925
Query 280068 GATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA---- 280123
| |||| | |||||| | || |||||| || | ||||| | || ||
Sbjct 221926 GGTCGCCCCATCATGTCCATGACTGACGTCTCGTTCACCTATCCGGGTTGCGAGAAGCCC 221985
Query 280124 CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACC 280183
|| || |||| ||||| | || || ||| ||| || |||| | | || |
Sbjct 221986 CAGCTCGAGCACA-TCAACGTCCGTGTCTCGATGGCCTCGCGCATTGCCTGCGTCGGTGC 222044
Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243
||| ||||| || ||||| ||| | ||||| | || || |||||| | || || | |
Sbjct 222045 CAACGGTGCTGGCAAGTCCACCATGATCAAGCTTCTTACCGGCGAGTTCAAGCCCTCGCA 222104
Query 280244 GGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCACGCTTTCC 280302
|| || | | ||||| || ||| ||| | | || |||||||| ||||| || ||||
Sbjct 222105 CGGTACCATCTTCAAGCACCCGAAC-TGCAAGTTCGCGTACGTCGCCCAGCATGCCTTCC 222163
Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357
||||||||||| | || || |||| ||| | ||| | |||||||||||||||||
Sbjct 222164 ACCACATCGAGCAGCATCTCGACAAGACCGCCAACGAGTACATTCAGTGGCGCTA 222218
Score = 116 bits (128), Expect = 8e-21
Identities = 424/655 (65%), Gaps = 34/655 (5%)
Strand=Plus/Minus
Query 279723 ATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTGATGAG 279782
|||||||| || || || ||||| || | |||||| |||| || | ||||||
Sbjct 278817 ATGAAGCTCGCTCTTACCGTGGCCATGCTCCGTAAGGCCGATATCCTCCTCATGGATGAG 278758
Query 279783 CCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAA----CCAG 279838
|| ||||||||| ||||| |||||| ||| | || |||||| | | ||
Sbjct 278757 CCCACCAACCACTTGGACGTGCTCAACGTCCAGTGGGTCGTCGACTACCTCATGGGCGAG 278698
Query 279839 TC-TG-AAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTG 279896
| || ||||| || | || ||||||||||| || ||| | ||||| || |||
Sbjct 278697 CCCTGCAAGAACGTGACCTCGCTCATTGTCTCGCATGACACCAAGTTCCTCGACAACGTC 278638
Query 279897 TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGCAACCTG 279956
| | ||| || |||| ||| | || |||||| ||| ||| |||||||||
Sbjct 278637 GCCACCCACATTATCCACTTTGAC---ACCCTCAAGCTCAACAACTACAAGGGCAACCTG 278581
Query 279957 TCTGCTTTCGTGGCAAAGCGC---CCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCC 280013
|| ||||| | ||||| || || || || ||||| || || | ||
Sbjct 278580 TCCAAGTTCGTCG---AGCGCTTCCCCGAAGCCAAGGCGTACTACGATCTCA------CC 278530
Query 280014 ACCGCCAAGTGGG------AATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCAAAG 280067
|| ||||| || | ||||| |||| || ||| || || ||| || |||
Sbjct 278529 GCCTCCAAGCTGGCCTTCAAGTTCCCCAAGCCTGGTCCTCTCGACGGTGTCAAGTCCAAG 278470
Query 280068 GATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCAA---- 280123
| |||| | |||||| | || |||||| || | ||||| | || ||
Sbjct 278469 GGTCGCCCCATCATGTCCATGACTGACGTCTCGTTCACCTATCCGGGTTGCGAGAAGCCC 278410
Query 280124 CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACC 280183
|| || |||| ||||| | || || ||| ||| || |||| | | || |
Sbjct 278409 CAGCTCGAGCACA-TCAACGTCCGTGTCTCGATGGCCTCGCGCATTGCCTGCGTCGGTGC 278351
Query 280184 CAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGA 280243
||| ||||| || ||||| ||| | ||||| | || || |||||| | || || | |
Sbjct 278350 CAACGGTGCTGGCAAGTCCACCATGATCAAGCTTCTTACCGGCGAGTTCAAGCCCTCGCA 278291
Query 280244 GGGGTCCGTTTGGAAGCATCCCAACATGCG-GATGGCTTACGTCGCTCAGCACGCTTTCC 280302
|| || | | ||||| || ||| ||| | | || |||||||| ||||| || ||||
Sbjct 278290 CGGTACCATCTTCAAGCACCCGAAC-TGCAAGTTCGCGTACGTCGCCCAGCATGCCTTCC 278232
Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357
||||||||||| | || || |||| ||| | ||| | |||||||||||||||||
Sbjct 278231 ACCACATCGAGCAGCATCTCGACAAGACCGCCAACGAGTACATTCAGTGGCGCTA 278177
>seq30
Length=443502
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903
||||| ||||||||||| ||||||| ||||||||| | ||||| ||||| | ||
Sbjct 288381 GTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCC 288440
Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963
|| ||| ||||||| ||||| ||||| || || ||||| || | | || || ||
Sbjct 288441 GCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGC 288500
Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA 251990
| | |||||||||||||||||||
Sbjct 288501 GGCAAAGCCAACAAGGCGCTCAGCAAA 288527
>seq27
Length=462098
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564
|||||||||||||| |||||||||| | ||||||||||| | |||||| |||||||| ||
Sbjct 379610 CCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGATCC 379552
Query 142565 CCACATCGGGCAGA 142578
|| ||| ||| |||
Sbjct 379551 CCTCATTGGGAAGA 379538
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|| |||||||||||||| |||||||||| | ||||||||||| | |||||| ||||||||
Sbjct 376637 TATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGA 376579
Query 142562 GCCCCACATCGGG 142574
|||| ||| |||
Sbjct 376578 TCCCCTCATTGGG 376566
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|| |||||||||||||| |||||||||| | ||||||||||| | |||||| ||||||||
Sbjct 377348 TATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGA 377290
Query 142562 GCCCCACATCGGG 142574
|||| ||| |||
Sbjct 377289 TCCCCTCATTGGG 377277
>seq38
Length=335856
Score = 84.2 bits (92), Expect = 4e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|| |||||||||||||| |||||||||| | ||||||||||| | |||||| ||||||||
Sbjct 206865 TATCCCGGTTAGCTCAG-CGGTAGAGCGTTTGACTCTTAATCAAATGGTCGAGGGTTCGA 206807
Query 142562 GCCCCACATCGGG 142574
|||| ||| |||
Sbjct 206806 TCCCCTCATTGGG 206794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027832559530802
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