Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7 125 6e-24 seq49 84.2 2e-11 >seq7 Length=852142 Score = 125 bits (138), Expect = 6e-24 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 114140 TTACCATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTG 114199 |||||||||||| |||| ||||| || | | || | || | |||||| || || || Sbjct 77957 TTACCATTTACA--TACCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTG 77900 Query 114200 AATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACG 114259 |||||||| ||||| | || || ||| || || || || |||||| | |||||||| Sbjct 77899 GATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACG 77840 Query 114260 CTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGT 114319 ||| || || || ||||| || || ||||| ||||| || || | | |||| || Sbjct 77839 CTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGT 77780 Query 114320 GTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 114379 ||| | || ||||| || | || | || ||||| |||||||| || ||||| ||||| Sbjct 77779 GTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTG 77720 Query 114380 CAT 114382 ||| Sbjct 77719 CAT 77717 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||| ||| Sbjct 77262 ATACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 77203 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || || || || || || |||||| ||||||||||||| || || || Sbjct 77202 CTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 77143 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || || | | |||| |||||| | | ||| Sbjct 77142 GGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCG 77083 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| ||||||||||||||||| Sbjct 77082 ACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||| ||| Sbjct 77490 ATACCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 77431 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || || || || || || |||||| ||||||||||||| || || || Sbjct 77430 CTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 77371 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || || | | |||| |||||| | || ||| Sbjct 77370 GGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCG 77311 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||||||| || ||||| |||||||| Sbjct 77310 ACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||| ||| Sbjct 77034 ATACCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 76975 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || || || || || || |||||| ||||||||||||| || || || Sbjct 76974 CTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGG 76915 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| || || | | |||| ||||| | | ||| Sbjct 76914 GGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCG 76855 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || || || || || || |||||||| Sbjct 76854 ACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| ||| Sbjct 77718 ATACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 77659 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || || || || || || || || ||| ||||||||||||| || || || Sbjct 77658 CTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGG 77599 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || ||||| || || | | |||| |||||| | | ||| Sbjct 77598 GGAATACCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCG 77539 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || || || || || |||||||| Sbjct 77538 ACATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 >seq49 Length=285000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||||| | || || || || || || || || Sbjct 148312 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 148253 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| || || || || || || || ||||| ||||| || || Sbjct 148252 GCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 148193 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || ||||| || | ||| | || ||||| || || || Sbjct 148192 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTC 148133 Query 114366 TTTACAAAAATCTG 114379 || || || ||||| Sbjct 148132 TTGACGAAGATCTG 148119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132751235064