Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq61 392 6e-104 seq30 288 2e-72 >seq61 Length=193651 Score = 392 bits (434), Expect = 6e-104 Identities = 1126/1712 (66%), Gaps = 45/1712 (3%) Strand=Plus/Minus Query 243947 ATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGC 244006 ||||| || |||||||||| | | |||||||| || |||| | |||||||||| Sbjct 59289 ATCTCCCACACCGTCTTGTAAAGTGCCTTGAGGTCATCCGGGATGACGGAGATGTTCTGC 59230 Query 244007 ACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCC-CAAGCG 244065 ||||| || | | | |||| ||| |||| || | | |||| ||||| | || | Sbjct 59229 ACCGAACCGCGATCGGCCATGATGTGGTTGCGAATCTCAGGCGTCCAGAGGCCGCGAGAG 59170 Query 244066 CTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCG 244125 | || ||| |||||||||| ||| || || | ||||| || | || |||||||| Sbjct 59169 ATG-AGGTCCTTGACCAGGTGCGCGTTAACGACGTTGAACTCGCCGGCGAGAACGCGGCG 59111 Query 244126 CTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGT 244185 | ||| | ||||||| | | ||||| | | ||| ||| || || ||||||| || Sbjct 59110 CGAGTACATGTTGCTGGTAAAAGGCTCAAAGGCCTCGCAGTTTCCGAGAATCTGCGAAGT 59051 Query 244186 GCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGA--TG 244243 || || |||||||||| || || || ||| | ||||||||| | || | Sbjct 59050 TGAGGCCGTGGGCATGGGCGCGACAAGGAGCGAGTTACGTACGCCGTGCTGCATGACATC 58991 Query 244244 CGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC----TCGCGTTTGAGGCC 244299 | | ||| || | ||||||||| ||| ||| ||| ||| | || | Sbjct 58990 CTGGCGAAGAG-TC-TCCCAGTCCCA---GCC---GAGCTCCGGGTTCG-GCTTCTCGTT 58940 Query 244300 CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGG 244359 ||| | |||||||| | | |||| ||| | ||| |||| ||| | ||| | Sbjct 58939 CCAGAGATCAAACTGGAACTTGCCCTCGCTCATGGGCGAGCCCGGAAAGGACTCGTAATG 58880 Query 244360 ACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAA 244419 || || || |||||||| || || | |||| | |||| ||||||||||| Sbjct 58879 GCCCTCCTCCTTGGCCAGCTCGCACGAGGCGGTGCAGGCGCCAAAGTAAATGGTCTCGAA 58820 Query 244420 GATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAA 244479 ||| ||||| | ||| |||| || || ||| || | | ||||| Sbjct 58819 GATGTCACGGTTCAATTTGCGCGCCTCCGGGCTCTCAAACGGGTAGCGAAGCTCCATGAG 58760 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 ||| ||| || ||||| || || ||||||| || | ||| ||| ||||| |||| Sbjct 58759 AGCGTTGGCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGCTGCGCTC 58700 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 ||| || |||||||||||||||||||| || || ||| ||||| ||| | | Sbjct 58699 GGCCTCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAAC 58640 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 | ||| || || ||||||||| || || |||| ||||| ||| Sbjct 58639 TTTGGTGACATCATAGAGGCCCTGAAAGTCATA------GGTGCCCTCTTCGATGTTGA- 58587 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 |||||| | ||| || |||||||||||| || || ||||| |||| | Sbjct 58586 -----CAAACTTGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGC 58532 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 ||||||| || ||||| ||||||||||| | |||||||| |||| |||| || || Sbjct 58531 AGTGTACTCGATGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTG 58472 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 || |||||| |||||| ||||||||| | ||||| |||||| | || ||||||| ||| Sbjct 58471 GTTCGACTTGCGGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTG 58412 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTC 244899 | | ||| | || |||||||||| || | |||| ||||| | ||||| Sbjct 58411 GCAGCTGAGAATCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTC 58352 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC--G 244957 ||||||||| ||| || ||| ||||||| ||| |||| || || || Sbjct 58351 CTTCTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTT 58292 Query 244958 GGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAG 245017 || | || |||||| | ||| |||| || | ||| ||| | || |||||| Sbjct 58291 GGCCTCG--TTCGGGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAA 58234 Query 245018 AGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG 245077 ||||| |||| |||||| || | |||||||| | | | | ||| ||| || | Sbjct 58233 AGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGG 58174 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 ||||| | ||||| | |||||| ||||||| | ||||||||||| | ||| | || Sbjct 58173 TTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCA 58114 Query 245138 AGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGAT 245196 | || ||| |||||| ||| ||||||||||| | | || | ||||||||| Sbjct 58113 AAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTG-TCGTTGAAGAC 58055 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTT 245256 |||||| | ||||| |||||||| || | |||||||||||| | |||| ||| Sbjct 58054 GCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTCCCGA 57995 Query 245257 GCCCCTGAGGTTGCTGATG--GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | | | |||| |||| |||| || | |||||||||| |||||||||| | ||| Sbjct 57994 AGCGCGAATGTTGTGGATGTTGACA--CCAATGCCGCCGGCGTACTTGGAGATGCGCGCG 57937 Query 245315 CAGCTCTTGATGGTGTCTG--CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAA 245372 || ||| || | ||||| |||||||| || ||| |||||||| | || | Sbjct 57936 CACGTCTCGA--GCGTCTGGAAGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGA 57879 Query 245373 AGCAGGAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGG 245431 ||||| |||| ||| |||| |||| | | | |||||| || ||||| ||||||| Sbjct 57878 AGCAGCTCGACATCTGCGGGCGCGGGG-TACCGGCGTTGAAGAGCGTGGGCGTGGCGTGC 57820 Query 245432 GTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCG 245491 |||||| | ||| | | ||| |||| | | ||| |||| || | Sbjct 57819 GTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTG 57760 Query 245492 TGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGT 245551 ||||| || | | | |||||| | |||||||| |||| ||| Sbjct 57759 TGGATACCCACAGAGACACGCATGAGCATCTGCTGGGGGCGCTCGGCAATCTTGTCGTTG 57700 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 ||||||||| ||| |||||||||||||||||||| |||||||| ||| | |||||| Sbjct 57699 ACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCG 57640 Query 245612 GCGTGGTGCCTGACGGCTGCGTCGAGTCTCTC 245643 | || | ||||||| |||||||| | ||| Sbjct 57639 CGCTCGTACTTGACGGCGGCGTCGAGACGCTC 57608 >seq30 Length=443502 Score = 288 bits (318), Expect = 2e-72 Identities = 592/868 (68%), Gaps = 23/868 (3%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| |||||||||| |||||| | |||||||||||| || ||| |||||| || Sbjct 288935 ATCCAGCACCAGGATATCTGGGACGCGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCT 288876 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||| | ||||||| | |||| | || || || || || | || ||| || Sbjct 288875 GAGGAGGTCGACCTGGGCCAGGATCAGCGCGACTTTGACTCGATGACCAAGGGCGAGCAG 288816 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 || |||| || | ||||| ||||| || |||| |||||||| ||| |||||| Sbjct 288815 CACTTTGTCAAGCACGTGCTGGCGTTCTTTGCTTCCTCGGACGGCATCGTCCTCGAGAAC 288756 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 ||| | || | |||||| || | |||||||||||||| |||||||| Sbjct 288755 GTGGTGGAGAACTTTTGTAGTGAGGTGAGTGTGCCG-GAGGCGCGCTGCTTTTACGGCTT 288697 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 |||||| ||||| |||||| | || | ||||||||| | ||||||| |||| || Sbjct 288696 CCAGATGGCCATCGAGAACATTCATGCCGAGGTGTACTCG---CTGCTCATCGACACCTA 288640 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 ||| | || | | |||| || | || ||||| ||| | ||| |||| ||| | Sbjct 288639 CATTCGCGACCGCACCGAGAAGCACAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGT 288580 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC----GCAACGTTCG 42696 | |||||||| | |||||| | || || || | | || ||| | || | Sbjct 288579 GCGGGAGAAGGCGCAGTGGGCGATGCGCTACATGGACGG---CAACATTTGCACCTTT-G 288524 Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 ||| | || || | |||| ||||||| || ||||||||||| || ||| | ||| | Sbjct 288523 CTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTCTGCG 288464 Query 42757 CCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | ||||| ||||||||| || || || ||||| || |||||||| || ||||| ||| Sbjct 288463 CGATCTTTTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGCCTCACCTTTTCCAACGAGCTC 288405 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC 42875 |||||| | |||||||| |||| | |||||||| |||||||| ||| || | ||| Sbjct 288404 ATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCTTC---CGCAAGCTC 288348 Query 42876 AGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 | ||| ||||||| ||| || || || | |||||| | |||||| || || ||| Sbjct 288347 CGCCACCCGCCCTCGGAGGCCCGCGTGCGCGAGATCATCGAGTCGGCCGTCGACATTGAG 288288 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 |||||| || | | |||| ||||| || ||||||||||| ||||||| Sbjct 288287 TGCGAGTTCATCTCCGACGCGCTCCCCGTCGAGCTTATCGGCATGAACTCTACCCTCATG 288228 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCT 43054 |||||||| ||| || || |||| ||| | | | || | | || | | | Sbjct 288227 CAGCAGTACATCAAGTTTGTGGCTGACCGTCTGGTCAAGTCGCTCGGCTTTAAGGC-CAT 288169 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 ||| | || |||||| |||| ||||| ||||||| || ||||||||||||| Sbjct 288168 TTACGGCGTGCAAAACCCCTTTGACTGGATGGACCTCATCTCGATGCAGGGCAAGACCAA 288109 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||| || |||||||| | ||| ||| Sbjct 288108 CTTTTTTGAAAAGCGCGTTGGCGAGTAC 288081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335399034720