Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq91 125 6e-24
>seq91
Length=99162
Score = 125 bits (138), Expect = 6e-24
Identities = 316/472 (67%), Gaps = 14/472 (3%)
Strand=Plus/Minus
Query 20281 GGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340
|||||||||||| || || || | ||| ||||| || || | ||| |||| || || ||
Sbjct 43004 GGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAGAACGCTGGTACATTTGGCACGA 42945
Query 20341 AAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400
|||||| || | | ||||| || ||| |||| ||| ||||||||||||||||| |
Sbjct 42944 AAGCTCGCCCTTGGAAACATAGAACTGAGCAAACATGTGGCAGGGCGGAAGCGCCATAAG 42885
Query 20401 C-GACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTT 20459
|| ||| | |||||||||||||| | | || || | | ||||| || || | |
Sbjct 42884 GTGAAAAG-CAGCCGGGTTCCACGCCGAGAGGATCATGCGACGATCGTTGGGGTTGGTCT 42826
Query 20460 TTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCA----GCA 20515
| || | ||| | | || | ||||| | |||| ||| | |||||| |||
Sbjct 42825 TAATCGTGTGCACGAGCTGCGCAAGCTGGTCGACACCCTTGCCCGAGTAGTCATCGTGCA 42766
Query 20516 TCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAA 20575
|| || ||| |||| |||||||||| |||||| ||||| || || || || |
Sbjct 42765 TCGTTGT----GTAGTCCGCACCAAAGTGCCGCCACTGAAAACCATAGACGGGGCCGAGG 42710
Query 20576 TCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTG 20635
|| || ||| || || | |||||| | | | || | || | ||| |||||
Sbjct 42709 TCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGATATTCACGGGACCCATTGCCA 42650
Query 20636 TCCCATATCTTGA-CTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCT-TCAGAA 20693
||||| || | || | || |||||| || | ||| | || || ||| || |
Sbjct 42649 TCCCAAATGTGGATGTTCTTTTCTTG-CAGTGTCTTGGCGCTCGT-GTCGCCTGACATGA 42592
Query 20694 ACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAG 20745
||||||| ||||| | | ||||| |||||||| || ||||| || || ||
Sbjct 42591 ACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTCGTCGTGAG 42540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441371023474480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |