Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq91 125 6e-24 >seq91 Length=99162 Score = 125 bits (138), Expect = 6e-24 Identities = 316/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Minus Query 20281 GGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGA 20340 |||||||||||| || || || | ||| ||||| || || | ||| |||| || || || Sbjct 43004 GGCAATGTTAAAGGGCACGCCAAGACCAATGTCACCAGAACGCTGGTACATTTGGCACGA 42945 Query 20341 AAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAA 20400 |||||| || | | ||||| || ||| |||| ||| ||||||||||||||||| | Sbjct 42944 AAGCTCGCCCTTGGAAACATAGAACTGAGCAAACATGTGGCAGGGCGGAAGCGCCATAAG 42885 Query 20401 C-GACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTT 20459 || ||| | |||||||||||||| | | || || | | ||||| || || | | Sbjct 42884 GTGAAAAG-CAGCCGGGTTCCACGCCGAGAGGATCATGCGACGATCGTTGGGGTTGGTCT 42826 Query 20460 TTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCA----GCA 20515 | || | ||| | | || | ||||| | |||| ||| | |||||| ||| Sbjct 42825 TAATCGTGTGCACGAGCTGCGCAAGCTGGTCGACACCCTTGCCCGAGTAGTCATCGTGCA 42766 Query 20516 TCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAA 20575 || || ||| |||| |||||||||| |||||| ||||| || || || || | Sbjct 42765 TCGTTGT----GTAGTCCGCACCAAAGTGCCGCCACTGAAAACCATAGACGGGGCCGAGG 42710 Query 20576 TCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTG 20635 || || ||| || || | |||||| | | | || | || | ||| ||||| Sbjct 42709 TCGCCTTCCTCTCGGTCTGTGAGGCCGATCTTGTCGAGATATTCACGGGACCCATTGCCA 42650 Query 20636 TCCCATATCTTGA-CTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCT-TCAGAA 20693 ||||| || | || | || |||||| || | ||| | || || ||| || | Sbjct 42649 TCCCAAATGTGGATGTTCTTTTCTTG-CAGTGTCTTGGCGCTCGT-GTCGCCTGACATGA 42592 Query 20694 ACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAG 20745 ||||||| ||||| | | ||||| |||||||| || ||||| || || || Sbjct 42591 ACCAAAGAAGCTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTCGTCGTGAG 42540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441371023474480