Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 125 2e-23 seq49 120 7e-22 >seq7 Length=852142 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || |||||| | Sbjct 77715 CCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 77656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || ||||||||||| |||||||| ||| | || Sbjct 77655 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGA 77596 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| ||| || ||||| || || | || | || || Sbjct 77595 ATACCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACA 77536 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 77535 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || |||||| Sbjct 77031 CCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 76972 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| |||||||| ||| | || Sbjct 76971 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 76912 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| ||| || ||||| || |||| || | || || Sbjct 76911 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACA 76852 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 76851 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || ||||| || |||||| Sbjct 77487 CCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77428 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| |||||||| ||| | || Sbjct 77427 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 77368 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || ||| || ||||| || || | || | || || Sbjct 77367 ATACCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACA 77308 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || |||||||||||||| || |||||||| Sbjct 77307 TCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || |||||| Sbjct 77943 CCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77884 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| || |||||||| ||| | || Sbjct 77883 AGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGA 77824 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| || ||||| || || | || | || || Sbjct 77823 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACA 77764 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || |||||||||||||| || |||||||| Sbjct 77763 TCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 >seq49 Length=285000 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | || || || ||||| || |||||| | Sbjct 148342 CCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTG 148283 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || |||||||| |||||||| ||| ||| Sbjct 148282 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGG 148223 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| |||||||| || || | || | || || Sbjct 148222 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 148163 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 ||||| ||||| ||||| || || || ||||||||||| ||||| Sbjct 148162 TCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649533188316