Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq7 125 2e-23
seq49 120 7e-22
>seq7
Length=852142
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | ||| || || ||||| || |||||| |
Sbjct 77715 CCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 77656
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || ||||||||||| |||||||| ||| | ||
Sbjct 77655 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGA 77596
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| ||| || ||||| || || | || | || ||
Sbjct 77595 ATACCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACA 77536
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 77535 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| || | || || || ||||| || ||||||
Sbjct 77031 CCACCACGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 76972
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||| |||||||| ||| | ||
Sbjct 76971 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 76912
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| ||| || ||||| || |||| || | || ||
Sbjct 76911 ATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACA 76852
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| || || || || || ||||| ||||| ||||||||
Sbjct 76851 TCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 76805
Score = 107 bits (118), Expect = 5e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | || || || ||||| || ||||||
Sbjct 77487 CCACCACGGAGGCGGAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77428
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||| |||||||| ||| | ||
Sbjct 77427 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGA 77368
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || ||| || ||||| || || | || | || ||
Sbjct 77367 ATACCCTCCTTGTCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACA 77308
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || ||||| || |||||||||||||| || ||||||||
Sbjct 77307 TCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 98.7 bits (108), Expect = 2e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || ||||||
Sbjct 77943 CCACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTA 77884
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||| || |||||||| ||| | ||
Sbjct 77883 AGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGA 77824
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| ||| || ||||| || || | || | || ||
Sbjct 77823 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACA 77764
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || || ||||| || |||||||||||||| || ||||||||
Sbjct 77763 TCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
>seq49
Length=285000
Score = 120 bits (132), Expect = 7e-22
Identities = 161/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || ||||| || | || || || ||||| || |||||| |
Sbjct 148342 CCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTG 148283
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|||||||| ||||| || | || || || |||||||| |||||||| ||| |||
Sbjct 148282 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGG 148223
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| ||| |||||||| || || | || | || ||
Sbjct 148222 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 148163
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470
||||| ||||| ||||| || || || ||||||||||| |||||
Sbjct 148162 TCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179649533188316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |