Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq30 89.7 1e-12
>seq30
Length=443502
Score = 89.7 bits (98), Expect = 1e-12
Identities = 289/442 (65%), Gaps = 10/442 (2%)
Strand=Plus/Minus
Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348
||||||||||| || || | || | ||| ||||| || | ||||| || ||||
Sbjct 288527 TTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTC 288468
Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408
||||| ||||||||||| ||| || | ||||| |||||| | || ||||||
Sbjct 288467 TGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAG 288408
Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468
||||||| |||||||||||| | ||| | || | | || | | ||||||
Sbjct 288407 CTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCTTCCGCAAGCTC 288348
Query 243469 CAGAACAAGCTACCATTCGAAA---CG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524
| || || || ||| | || || | |||||| || || || |
Sbjct 288347 CGCCACCCGC--CC--TCGGAGGCCCGCGTGCGCGAGATCATCGAGTCGGCCGTCGACAT 288292
Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584
|| || ||||| | |||||| | || | |||||| |||||||||||| ||
Sbjct 288291 TGAGTGCGAGTTCATCTCCGACGCGCTCCCCGTCGAGCTTATCGGCATGAACTCTACCCT 288232
Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644
|||| ||||||||| | || || || ||||| | ||| |||| || | | ||
Sbjct 288231 CATGCAGCAGTACATCAAGTTTGTGGCTGACCGTCTGGTCAAGTCGCTCGGCTTTAAGGC 288172
Query 243645 AGTGTACAAC-TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703
| ||| | | ||| |||||||||| || ||||| ||||| ||| | || || || |
Sbjct 288171 CATTTACGGCGTGCAA-AACCCCTTTGACTGGATGGACCTCATCTCGATGCAGGGCAAGA 288113
Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725
| ||||| || |||||||| ||
Sbjct 288112 CCAACTTTTTTGAAAAGCGCGT 288091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102875449930700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |