Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq30 89.7 1e-12 >seq30 Length=443502 Score = 89.7 bits (98), Expect = 1e-12 Identities = 289/442 (65%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||||||||| || || | || | ||| ||||| || | ||||| || |||| Sbjct 288527 TTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTC 288468 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||| ||||||||||| ||| || | ||||| |||||| | || |||||| Sbjct 288467 TGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAG 288408 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||||| |||||||||||| | ||| | || | | || | | |||||| Sbjct 288407 CTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCTTCCGCAAGCTC 288348 Query 243469 CAGAACAAGCTACCATTCGAAA---CG-GTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 | || || || ||| | || || | |||||| || || || | Sbjct 288347 CGCCACCCGC--CC--TCGGAGGCCCGCGTGCGCGAGATCATCGAGTCGGCCGTCGACAT 288292 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || || ||||| | |||||| | || | |||||| |||||||||||| || Sbjct 288291 TGAGTGCGAGTTCATCTCCGACGCGCTCCCCGTCGAGCTTATCGGCATGAACTCTACCCT 288232 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| ||||||||| | || || || ||||| | ||| |||| || | | || Sbjct 288231 CATGCAGCAGTACATCAAGTTTGTGGCTGACCGTCTGGTCAAGTCGCTCGGCTTTAAGGC 288172 Query 243645 AGTGTACAAC-TCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | ||| | | ||| |||||||||| || ||||| ||||| ||| | || || || | Sbjct 288171 CATTTACGGCGTGCAA-AACCCCTTTGACTGGATGGACCTCATCTCGATGCAGGGCAAGA 288113 Query 243704 CTAACTTCTTCGAAAAGCGTGT 243725 | ||||| || |||||||| || Sbjct 288112 CCAACTTTTTTGAAAAGCGCGT 288091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875449930700