Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq61 266 4e-66 seq30 100 3e-16 >seq61 Length=193651 Score = 266 bits (294), Expect = 4e-66 Identities = 697/1046 (67%), Gaps = 33/1046 (3%) Strand=Plus/Minus Query 114290 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 114349 ||||| || || ||||| | ||| | ||||| || | ||| || | || ||| | Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGC---TGCGCTCGGCC 58696 Query 114350 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 ||| ||||| ||||| || | || ||||| | ||||| || ||||| ||||| || Sbjct 58695 TCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTG 58636 Query 114407 GTGATTTCAT-GAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCA---TTGACATACT 114461 |||| |||| || || | | || ||| | ||| |||||| |||||| ||| Sbjct 58635 GTGACATCATAGAGGCCCT--GAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACT 58581 Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521 | ||||| ||| || ||||| || || |||| | ||||||| |||||||||| | Sbjct 58580 TGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGA 58521 Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 114581 | || ||||| || | || || ||| ||| |||| | |||||| || || ||||| Sbjct 58520 TGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGC 58461 Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 114641 ||| || || |||||| ||||||| | ||| |||||||| | ||| | |||||| Sbjct 58460 GGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAA 58401 Query 114642 TAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 114701 | | ||||| || ||| ||| || | | || ||||||| |||||| Sbjct 58400 TCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGC 58341 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 |||||| | | ||||| || || | | || |||||||| |||| | | Sbjct 58340 GCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCG 58281 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 |||| ||||| | ||| | | |||| || |||| |||||| ||||| |||| || Sbjct 58280 GGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCC 58221 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAA 114879 |||| || | ||||| || || ||| | |||| || | || || || || | Sbjct 58220 AGAGCGCGTAAAAGAGGTCGCGC--GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAG 58163 Query 114880 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 114939 ||| | |||||| || || || ||||| || || ||||||| || | || ||||| Sbjct 58162 CTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTT 58103 Query 114940 ACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGG 114996 || | || |||||| || || | || ||| | || || ||||| ||||| || Sbjct 58102 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGG 58043 Query 114997 AATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACA 115054 | ||| || | || | ||| || || || | ||| ||| | || | | Sbjct 58042 CACGATGCCGTTGGACTTGCCGTTGGTGCC--GGCCACGTAGCTTCCCGAAGCGCGAATG 57985 Query 115055 TCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGA 115112 | ||||||| | |||||| || || || |||| ||||| |||||||| || || | Sbjct 57984 TTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGC 57925 Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCTCGAC 115171 | ||| | |||| || || |||||||| |||| || ||| | ||||||||||||||| Sbjct 57924 GTCTG--GAAGATGCCCTCAATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGAC 57868 Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 115231 || || || | || ||||| ||||||||||| || || || ||||| | || | | Sbjct 57867 ATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTT 57808 Query 115232 TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 115291 || |||||| | | ||||||||| | | | | |||||||||| ||| ||||| | Sbjct 57807 TGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACA 57748 Query 115292 GAGACCCGCATAAACATGTATTGGGG 115317 ||||| ||||| | ||| | ||||| Sbjct 57747 GAGACACGCATGAGCATCTGCTGGGG 57722 >seq30 Length=443502 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | |||||||| ||| |||||| || || || ||| || || Sbjct 288370 GCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCC 288429 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | ||| || ||||| || || || || || |||||||| Sbjct 288430 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATG 288489 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 || ||||| || || ||| || ||||||||||||| || || ||| | Sbjct 288490 CCTTCCACGGCGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATG 288549 Query 126227 CACTTCATCGCCCACTGCGCCTT 126249 | |||||||||||||||||| Sbjct 288550 TAGCGCATCGCCCACTGCGCCTT 288572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351195651760