Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq61 266 4e-66
seq30 100 3e-16
>seq61
Length=193651
Score = 266 bits (294), Expect = 4e-66
Identities = 697/1046 (67%), Gaps = 33/1046 (3%)
Strand=Plus/Minus
Query 114290 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 114349
||||| || || ||||| | ||| | ||||| || | ||| || | || ||| |
Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGC---TGCGCTCGGCC 58696
Query 114350 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406
||| ||||| ||||| || | || ||||| | ||||| || ||||| ||||| ||
Sbjct 58695 TCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTG 58636
Query 114407 GTGATTTCAT-GAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCA---TTGACATACT 114461
|||| |||| || || | | || ||| | ||| |||||| |||||| |||
Sbjct 58635 GTGACATCATAGAGGCCCT--GAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACT 58581
Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521
| ||||| ||| || ||||| || || |||| | ||||||| |||||||||| |
Sbjct 58580 TGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGA 58521
Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 114581
| || ||||| || | || || ||| ||| |||| | |||||| || || |||||
Sbjct 58520 TGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGC 58461
Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 114641
||| || || |||||| ||||||| | ||| |||||||| | ||| | ||||||
Sbjct 58460 GGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAA 58401
Query 114642 TAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 114701
| | ||||| || ||| ||| || | | || ||||||| ||||||
Sbjct 58400 TCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGC 58341
Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761
|||||| | | ||||| || || | | || |||||||| |||| | |
Sbjct 58340 GCTCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCG 58281
Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821
|||| ||||| | ||| | | |||| || |||| |||||| ||||| |||| ||
Sbjct 58280 GGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCC 58221
Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAA 114879
|||| || | ||||| || || ||| | |||| || | || || || || |
Sbjct 58220 AGAGCGCGTAAAAGAGGTCGCGC--GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAG 58163
Query 114880 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 114939
||| | |||||| || || || ||||| || || ||||||| || | || |||||
Sbjct 58162 CTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTT 58103
Query 114940 ACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGG 114996
|| | || |||||| || || | || ||| | || || ||||| ||||| ||
Sbjct 58102 GCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGG 58043
Query 114997 AATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACA 115054
| ||| || | || | ||| || || || | ||| ||| | || | |
Sbjct 58042 CACGATGCCGTTGGACTTGCCGTTGGTGCC--GGCCACGTAGCTTCCCGAAGCGCGAATG 57985
Query 115055 TCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC-TC-CGTGA 115112
| ||||||| | |||||| || || || |||| ||||| |||||||| || || |
Sbjct 57984 TTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGC 57925
Query 115113 GACTGCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCTCGAC 115171
| ||| | |||| || || |||||||| |||| || ||| | |||||||||||||||
Sbjct 57924 GTCTG--GAAGATGCCCTCAATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGAC 57868
Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT 115231
|| || || | || ||||| ||||||||||| || || || ||||| | || | |
Sbjct 57867 ATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTT 57808
Query 115232 TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 115291
|| |||||| | | ||||||||| | | | | |||||||||| ||| ||||| |
Sbjct 57807 TGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACA 57748
Query 115292 GAGACCCGCATAAACATGTATTGGGG 115317
||||| ||||| | ||| | |||||
Sbjct 57747 GAGACACGCATGAGCATCTGCTGGGG 57722
>seq30
Length=443502
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106
||||| || ||| | |||||||| ||| |||||| || || || ||| || ||
Sbjct 288370 GCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCC 288429
Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166
|||||||| || |||||||| | ||| || ||||| || || || || || ||||||||
Sbjct 288430 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATG 288489
Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226
|| ||||| || || ||| || ||||||||||||| || || ||| |
Sbjct 288490 CCTTCCACGGCGGCAAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGTCCATG 288549
Query 126227 CACTTCATCGCCCACTGCGCCTT 126249
| ||||||||||||||||||
Sbjct 288550 TAGCGCATCGCCCACTGCGCCTT 288572
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597351195651760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |