Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7 113 5e-20 seq53 98.7 1e-15 >seq7 Length=852142 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || |||| || |||||||| |||||||| Sbjct 76996 CTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 76937 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | || |||||| ||| ||| || || |||| | Sbjct 76936 GATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTT 76877 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || ||||| | ||||||||||||||||| || ||||| || Sbjct 76876 CTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAAC 76817 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 76816 GAAGATCTGCATCTT 76802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || |||| || |||||||| |||||||| Sbjct 77224 CTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 77165 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | | |||||| ||| || || || |||| | Sbjct 77164 GATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGTT 77105 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || ||||| | |||||||| ||||| || || |||||||| Sbjct 77104 CTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTAC 77045 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 77044 AAAAATCTGCAT 77033 >seq53 Length=241909 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || |||| || |||||||| || ||||| Sbjct 193408 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 193349 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| || | || | | |||||||||| || || || || | | Sbjct 193348 GATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTT 193289 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || ||||||| |||||||| || ||||| || |||||||| Sbjct 193288 CTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTAC 193229 Query 42197 AAAGATTTG 42205 |||||| || Sbjct 193228 AAAGATCTG 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543210613568480