Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq7 113 5e-20
seq53 98.7 1e-15
>seq7
Length=852142
Score = 113 bits (124), Expect = 5e-20
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || |||| || |||||||| ||||||||
Sbjct 76996 CTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 76937
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| |||||||| || | || | || |||||| ||| ||| || || |||| |
Sbjct 76936 GATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTT 76877
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| | || ||||| | ||||||||||||||||| || ||||| ||
Sbjct 76876 CTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAAC 76817
Query 42197 AAAGATTTGCATTTT 42211
||||| ||||| ||
Sbjct 76816 GAAGATCTGCATCTT 76802
Score = 98.7 bits (108), Expect = 1e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || |||| || |||||||| ||||||||
Sbjct 77224 CTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 77165
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| |||||||| || | || | | |||||| ||| || || || |||| |
Sbjct 77164 GATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGTT 77105
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| | || ||||| | |||||||| ||||| || || ||||||||
Sbjct 77104 CTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTAC 77045
Query 42197 AAAGATTTGCAT 42208
||| || |||||
Sbjct 77044 AAAAATCTGCAT 77033
>seq53
Length=241909
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || |||| || |||||||| || |||||
Sbjct 193408 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 193349
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| |||||||| || | || | | |||||||||| || || || || | |
Sbjct 193348 GATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTT 193289
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||| | || ||||||| |||||||| || ||||| || ||||||||
Sbjct 193288 CTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTTAC 193229
Query 42197 AAAGATTTG 42205
|||||| ||
Sbjct 193228 AAAGATCTG 193220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543210613568480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |