Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq7 102 8e-17
seq49 95.1 1e-14
seq53 86.0 6e-12
>seq7
Length=852142
Score = 102 bits (112), Expect = 8e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTC 64290
||||| || || | ||| || || || || |||||||| || || | | ||||| | ||
Sbjct 77928 AGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGTGTGCGGCCATC 77870
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || ||||||| |||||||| || || ||||| || || || ||
Sbjct 77869 CTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTC 77810
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || ||| | || || || || || || | ||| | ||
Sbjct 77809 CTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGT 77750
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| ||| || || || || |||||
Sbjct 77749 CTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77717
Score = 98.7 bits (108), Expect = 1e-15
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTC 64290
||||| || || | || || || || || |||||||| || || | | ||||| ||||
Sbjct 77244 AGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTC 77186
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || | ||||| |||||||| || || || || || || || ||
Sbjct 77185 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATC 77126
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || ||| | || || | || || || | || | |||
Sbjct 77125 CTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGT 77066
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||||| | ||| ||||| ||||| |||||
Sbjct 77065 CTTGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033
Score = 98.7 bits (108), Expect = 1e-15
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTC 64290
||||| || || | || || || || || |||||||| || || | | ||||| ||||
Sbjct 77472 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTC 77414
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || | ||||| |||||||| || || ||||| || || || ||
Sbjct 77413 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTC 77354
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || ||| | || || || || || || | ||| | ||
Sbjct 77353 CTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGT 77294
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||| ||| || || || || |||||
Sbjct 77293 CTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 77261
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || || ||||| ||||
Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | ||||| |||||||| || || ||||| || || || ||
Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||||| || ||| | || || | || || || | || | ||||
Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || ||||| || |||||
Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 77489
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACG-GTGCGCGCGTC 64290
||||| || || | || || || || || |||||||| || || | | ||||| ||||
Sbjct 77016 AGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTC 76958
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || | ||||| |||||||| || || ||||| || || || ||
Sbjct 76957 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATC 76898
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || ||| | || || | || || || | || | |||
Sbjct 76897 CTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGT 76838
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| || | || || ||||| || ||||| ||
Sbjct 76837 TTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 76802
>seq49
Length=285000
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||| | | ||||| || || | || || || || || |||||||| ||
Sbjct 148343 ACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 148284
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| ||||| |||| || |||||||||||||| | ||||| |||||||| ||||| ||
Sbjct 148283 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGG 148224
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || || ||||| || ||| | || || || || ||
Sbjct 148223 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGAC 148164
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTG 64440
|| | || | ||||||||| || | || || ||||| || ||
Sbjct 148163 ATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq53
Length=241909
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | || || || || || |||||||| || || ||||| ||||
Sbjct 193429 AAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTC 193370
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| |||||||||||||| | ||||| |||||||| || || ||||| || || || ||
Sbjct 193369 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTC 193310
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| || ||| | || || || || || || | || | |||
Sbjct 193309 CTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGT 193250
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTG 64440
||| || || | || ||||| || || ||
Sbjct 193249 CTTACCCGTGAGGGTCTTTACAAAGATCTG 193220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499642788929680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |