Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq61 398 8e-106 >seq61 Length=193651 Score = 398 bits (440), Expect = 8e-106 Identities = 1136/1717 (66%), Gaps = 52/1717 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| || || ||| |||||||| |||||| | | | || | Sbjct 57650 TACGACTACTTTGGCTTCAAGACGCTCGAGCGCTCGTACCTGCTCAAGGTCAACGACAAG 57709 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| || || ||| |||| ||||| ||| | | || || ||| | ||| Sbjct 57710 ATTGCCGAGCGCCCCCAGCAGATGCTCATGCGTGTCTCTGTGGGTATCCACAAGGAAGAC 57769 Query 93838 ATG--CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCA 93895 || ||| || | | | | || ||| | | ||| | ||| |||| Sbjct 57770 ATTGACCG--TGCCATTGAGACCTACAACATGATGTCGCAAAAGTTCTTTACGCACGCCA 57827 Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 | || || || |||||||| || |||||| || |||||||| || ||||| || Sbjct 57828 CGCCCACGCTCTTCAACGCCGGTACCCCGCGCCCGCAGATGTCGAGCTGCTTCCTCGTGC 57887 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| |||||| || || || ||| | | ||| || || ||| ||||| Sbjct 57888 ACATGAAGGACGACTCGATTGAGGGCATCTTCCAGACGCTCGAGACGTGCGCGCGCATCT 57947 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || ||||| || || || || ||| ||||| || | || || ||| |||| Sbjct 57948 CCAAGTACGCCGGCGGCATTGGTGTCAACATCCACAACATTCGCGCTTCGGGAAGCTACG 58007 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | ||| ||||| |||| ||||||||| |||| || ||||| || ||||||||| || Sbjct 58008 TGGCCGGCACCAACGGCAAGTCCAACGGCATCGTGCCCATGCTGCGCGTCTTCAACGACA 58067 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 |||| ||||||||||||||||| || || | | | ||||| || || || | || || | Sbjct 58068 CGGCCCGCTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTTGCCATGTACCTTG 58127 Query 94196 AGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 |||||||||| || ||||| | || |||| || || || || ||||||||||| || || Sbjct 58128 AGCCCTGGCATGCCGACGTCGAAGACTTT-ATTGAGCTCCGCAAGAACCACGGTAAGGA- 58185 Query 94255 CTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 ||||| | || | |||||||| ||||| |||||||| || |||||||| ||| | Sbjct 58186 --GGAGAACCGCGCGCGCGACCTCTTTTACGCGCTCTGGGTCCCTGACCTTTTCATGGAG 58243 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCC--CGGACTGT 94369 ||||||||| ||| | |||||| || ||||| || || || | || || || | Sbjct 58244 CGCGTCGAGGCGAACAGCACCTGGACGCTCTTTTGCCCGAACGA--GGCCAAGGGGCTCT 58301 Query 94370 CCGACGTTTGTGGATCG-CGTTTTGAA-GACTTGTATGCTCGTTACGAATCGCAGGG-CA 94426 | ||||| | ||| || || || || || | || | || ||||| | |||| | Sbjct 58302 CGGACGTCTATGG--CGACGAGTTCAAGGAGCTCTACGAGCGCTACGAGAAGGAGGGTCG 58359 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | | ||| ||| || | | || ||| | ||||| | | ||| | | Sbjct 58360 CGGTC-GCAAGACGATGCGCGCCCAGGACCTCTGGTACCAGATTCTCAGCTGCCAGATCG 58418 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||||||| ||||| || | ||||||||| | |||| |||||| |||||| || Sbjct 58419 AGACGGGTGTGCCCTTTATGCTTTTCAAGGACGCATGCAACCGCAAGTCGAACCAGAAGA 58478 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| || | |||||| |||||| || ||||| ||||| ||||||| ||| | |||| Sbjct 58479 ACCTTGGCATCATCAAGTCCTCGAACCTCTGCACGGAGATCATCGAGTACACTGCCCCGG 58538 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | ||||| || ||||||| ||| |||||||| || || || | | || | Sbjct 58539 ATGAGGTCGCTGTTTGCAACCTGGCCTCGATCAACCTTCGCAAGTTTGT-CAACAT-CGA 58596 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGTC 94725 | | | | || | ||| ||| || | || | || | | || | Sbjct 58597 AGAGGGCACCTATGACTTTC-------AGGGCCTCTATG-ATGTCACCAAAGTTGTGACC 58648 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 |||||| ||| | || || ||| ||||| ||||||||| |||||| ||| | Sbjct 58649 AAGAACCTAAACCGCGTTATTGACGGCAACTTTTACCCCGTCGAGGAGGCCGAGCGCAGC 58708 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| || || || || ||||||| || || ||||| |||| |||| || || | Sbjct 58709 AACATGCGCCACCGCCCTGTCGGCATTGGTGTACAGGGCCTCGCCAACGCTCTCATGGAG 58768 Query 94846 ATGCGTCTGCCC---TACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | || || ||| | || | | || ||| ||||| |||| ||||| Sbjct 58769 CTTCG-CTACCCGTTTGAGAGCCCG--GAGGCGCGCAAATTGAACCGTGACATCTTCGAG 58825 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGT-CCACTTGGCCAGATCGGACGGCGGGCC 94961 | |||||| | || ||| || | | ||| | | |||||| ||| || ||||| Sbjct 58826 ACCATTTACTTTGGCGCC-TGCACCGCCTCGTGCGAGCTGGCCA---AGGA-GGAGGGCC 58880 Query 94962 A-CACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGG 95020 | |||| || || | || |||||| || |||||| || ||||| || |||||| Sbjct 58881 ATTACGAGTCCTTTCCGGGCTCGCCCATGAGCGAGGGCAAGTTCCAGTTTGATCTCTGGA 58940 Query 95021 GTGTGAAGCC---CTCGGGTCT---GTACGACTGGGAAGCTCTACGCGCTGATGTTATCA 95074 | |||||| | ||| || | |||||||| |||| ||| ||||| || Sbjct 58941 ACGAGAAGCCGAACCCGGAGCTCGGCTGGGACTGGGAGACTCTTCGCCAGGATGTCATGC 59000 Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 | ||||| || ||| |||| ||||| || ||||||||||||||||| || |||||| Sbjct 59001 AGCACGGCGTACGTAACTCGCTCCTTGTCGCGCCCATGCCCACGGCCTCAACTTCGCAGA 59060 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | || || ||| |||| | || || || || ||| |||| ||||| | || || | Sbjct 59061 TTCTCGGAAACTGCGAGGCCTTTGAGCCTTTTACCAGCAACATGTACTCGCGCCGCGTTC 59120 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 ||||||| || ||| |||| | ||| |||||| | |||||| | |||| || Sbjct 59121 TCGCCGGCGAGTTCAACGTCGTTAACGCGCACCTGGTCAAGGACCTCATCTCTCGCGGCC 59180 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 | ||| || | ||||| | | || ||| || || ||||||||| Sbjct 59181 TCTGGACGCCTGAGATTCGCAACCACATCATGGCCGATCGCGGTTCGGTGCAGAACATCT 59240 Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCG 95374 | || ||||| ||| ||||||| || |||||||| |||||||||||| |||||| Sbjct 59241 CCGTCATCCCGGATGACCTCAAGGCACTTTACAAGACGGTGTGGGAGATCAAGCAGCGTT 59300 Query 95375 TGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCAT 95411 | | |||| ||||||| ||| || |||| || Sbjct 59301 GCCTCATTGACCTTGCGGCCGACCGTGGTGCCTTTAT 59337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721208739120