Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq61 223 3e-53 seq7 107 2e-18 seq53 96.9 3e-15 seq49 93.3 4e-14 seq1 84.2 2e-11 >seq61 Length=193651 Score = 223 bits (246), Expect = 3e-53 Identities = 577/868 (66%), Gaps = 25/868 (3%) Strand=Plus/Minus Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 || || ||||| || || || || ||| || | | | |||||| | |||||| | | Sbjct 58569 ATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGATGATCTCCGTG 58510 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 |||||||| | | || |||| ||| | || | ||| || ||||| ||||| ||| Sbjct 58509 CAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGCGGTTGCATGCG 58450 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCGACGATAAACCTATG 153778 || ||||| ||||| | || | || ||||||| || || | || || | | Sbjct 58449 TCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCT----GAGAATCTGGTA 58394 Query 153779 C---AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTA 153835 | |||||||| || |||| | || ||| ||| ||||| ||||||| |||||||| Sbjct 58393 CCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGCGCTCGTA 58334 Query 153836 CAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACAT 153895 || || ||||||||||| ||| ||| | ||| || || | ||| || | Sbjct 58333 GAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCGGGCAAAA 58274 Query 153896 CAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGC 153955 |||| ||| | || || | |||||| |||||| || || || ||||||||||| Sbjct 58273 GAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGC 58214 Query 153956 GTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA--TTGAGC 154013 ||| | |||||||||||| | |||||| || ||| || | || | | Sbjct 58213 GTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGGTTC--TTGCGGAGCTCAATA 58156 Query 154014 ACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT 154073 | | | || |||||| |||||||| |||| ||| | ||| | || || || ||||| Sbjct 58155 AAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTG 58096 Query 154074 CCGCC---CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGG 154130 ||||| ||| || |||| ||| || | | |||||||||||||| |||||| | | | Sbjct 58095 CCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATG 58036 Query 154131 CCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACG 154190 ||| | | |||||||||| | | ||| || ||||| | | || | | Sbjct 58035 CCGTTGGACTTGCCGTTGGTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATG 57976 Query 154191 TTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTA 154249 || || |||||||||||| ||||||| || ||| ||||| ||| | |||||| | | Sbjct 57975 TTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCG-AGCGTCTGGAA 57917 Query 154250 GATGCCGTCGATGCTATCGTCGCGGACGC---CGAGCAAGAAACACGAACACATTTGCGG 154306 |||||| || || ||||| | | |||| ||| | | ||| ||| ||||| Sbjct 57916 GATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGA---CATCTGCGG 57860 Query 154307 AATGCGCGTTCCCGCCGAA-AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 ||| | | ||| || ||||| ||||| | ||||||||||| | ||||| || Sbjct 57859 GC-GCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACA 57801 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 ||||| ||| || || ||||| || || || || ||| || || | | ||| | Sbjct 57800 TCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACAGAGACAC 57741 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGC 154453 |||||||||| ||||| || || ||||| Sbjct 57740 GCATGAGCATCTGCTGGGGGCGCTCGGC 57713 >seq7 Length=852142 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || || | Sbjct 77454 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 77395 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || ||||| || ||||| || || || || | Sbjct 77394 AAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACG 77335 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || |||| || | || || ||||||||||| || Sbjct 77334 TTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTG 77275 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 77274 ACAAAGATCTGCAT 77261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || || | Sbjct 77226 GACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCG 77167 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 77166 AAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACG 77107 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || || | || | || || || || ||||| ||| Sbjct 77106 TTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTT 77047 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 77046 ACAAAAATCTGCAT 77033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || |||||||| || || || | Sbjct 77910 GACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 77851 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| || || || || ||||| || ||||| ||| || || || | Sbjct 77850 AAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACG 77791 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | ||| || |||| || | || || ||||||||||| || Sbjct 77790 TTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTG 77731 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 77730 ACAAAGATCTGCAT 77717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || || | Sbjct 77682 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCG 77623 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || ||||| || || || ||| || || || | Sbjct 77622 AAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTTCTGCTTGACG 77563 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || || | || | || || || || || || || Sbjct 77562 TTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTG 77503 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 77502 ACGAAGATCTGCAT 77489 >seq53 Length=241909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || |||| Sbjct 193410 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 193351 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || || || ||||| || ||||| || || || || | Sbjct 193350 AAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTCACG 193291 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || |||| || | || ||||| || || || ||| Sbjct 193290 TTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTT 193231 Query 138601 ACAAAAATCTG 138611 ||||| ||||| Sbjct 193230 ACAAAGATCTG 193220 >seq49 Length=285000 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||| | || || ||||||||| || || |||| Sbjct 148309 GACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 148250 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || || || ||||| || ||||| ||| || || || | Sbjct 148249 AAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACG 148190 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| || |||| || | || || || || || || || Sbjct 148189 TTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTG 148130 Query 138601 ACAAAAATCTG 138611 || || ||||| Sbjct 148129 ACGAAGATCTG 148119 >seq1 Length=1674554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||| || || || |||| Sbjct 772331 GACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 772272 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || || || ||||| |||||||| ||| || || || | Sbjct 772271 AAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGGATCTTCTGCTTCACA 772212 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGA 138571 | || | |||||| | | ||| || |||| Sbjct 772211 TTCTCGATGGTGTCCGAGGGCTCGACATCGA 772181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260402543840