Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq7 143 3e-29
seq49 129 6e-25
seq61 116 4e-21
seq53 116 4e-21
seq1 100 3e-16
>seq7
Length=852142
Score = 143 bits (158), Expect = 3e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| |||| | |||||| || || ||||| || |||
Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || || |||||||| ||| || |||||||||
Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTG 77110
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||||| | |||||| || | ||| | || |||||||| |||||
Sbjct 77109 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTC 77050
Query 127097 TTTACAAAAATCTGCAT 127113
|||||||||||||||||
Sbjct 77049 TTTACAAAAATCTGCAT 77033
Score = 141 bits (156), Expect = 9e-29
Identities = 179/245 (73%), Gaps = 6/245 (2%)
Strand=Plus/Minus
Query 126869 ACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTT 126928
||||||||| |||| |||| || | || | ||||| || | ||||||||| ||
Sbjct 77955 ACCATTTAC-ATAC-----CACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTC 77902
Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988
|| || ||||| |||| | ||||| ||| || ||||| || |||||| | || |
Sbjct 77901 TGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGA 77842
Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048
||||||||||| || || || |||||||||||| ||| |||||||||| | || |
Sbjct 77841 CGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATC 77782
Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108
||||||| |||||| |||| || | || ||||| |||||||| || ||||| |||
Sbjct 77781 GTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATC 77722
Query 127109 TGCAT 127113
|||||
Sbjct 77721 TGCAT 77717
Score = 134 bits (148), Expect = 1e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| |||| | |||||| || || ||||| || |||
Sbjct 77457 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77398
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || || |||||||||||| || |||||||||
Sbjct 77397 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTG 77338
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||||| |||||| |||| || | || ||||| ||||||||
Sbjct 77337 ACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTC 77278
Query 127097 TTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 77277 TTGACAAAGATCTGCAT 77261
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| |||| | |||||| || || ||||| || |||
Sbjct 77001 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 76942
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || ||||||||||| ||| ||| |||||||||
Sbjct 76941 GCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTG 76882
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | ||||||| | |||||| || | ||| | |||||||| || || ||
Sbjct 76881 ACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTC 76822
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 76821 TTAACGAAGATCTGCAT 76805
Score = 116 bits (128), Expect = 4e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| |||| | |||||| || || ||||| || ||
Sbjct 77685 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCT 77626
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || || |||||||| ||| ||| |||||||||
Sbjct 77625 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTTCTGCTTG 77566
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | || | |||||||| | |||||| || | ||| | || ||||| || || ||
Sbjct 77565 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGTGAGGGTC 77506
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 77505 TTGACGAAGATCTGCAT 77489
>seq49
Length=285000
Score = 129 bits (142), Expect = 6e-25
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||| | || | |||||||| || || || ||||| ||||
Sbjct 148342 CCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTG 148283
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| |||| | |||||||||||||| ||
Sbjct 148282 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGG 148223
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| |||||||| | | |||| |||||||| ||||||
Sbjct 148222 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 148163
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110
|||| ||| | || ||||| || || || || || || |||||
Sbjct 148162 TCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119
>seq61
Length=193651
Score = 116 bits (128), Expect = 4e-21
Identities = 305/457 (67%), Gaps = 10/457 (2%)
Strand=Plus/Minus
Query 145756 GTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTC 145815
|| ||||| ||||| | || |||||||| || ||||| ||||||||| || |
Sbjct 59454 GTACGCAGGTAGTAGAGACCCGTCTTGAGGCCGCGCTTCCACGAGTAAAAGTG---GCAC 59398
Query 145816 GACATGACCGAGT--ACGTGGGT-TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCA 145872
|| ||| | | |||| || ||||| | | | || || || || ||| |||
Sbjct 59397 GAAGTGAGCTTGCCAACGTTGGCCTCGGCCATGTAAATGTTGAGCGACTGCGACTGGTCA 59338
Query 145873 ATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCA-CTTTGATTTAATTTCCCATGC 145931
|| || | | | |||||||| || | ||| || | ||| | || || | | ||||| |
Sbjct 59337 ATAAAGGCACCACGGTCGGCCGCAAGGTCAATGAGGCAACGCTGCTTGA-TCTCCCACAC 59279
Query 145932 GGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATT 145991
|| || | || |||||| || | || || || ||||||||||| || ||
Sbjct 59278 CGTCTTGTAAAGTGCCTTGAGGTCATCCGGGATGACGGAGATGTTCTGCACCGAACCGCG 59219
Query 145992 TTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTT-CAAGTCTACGAGGGCCT 146050
||||||| || | |||||| | || || || | | | | || | |||| |||
Sbjct 59218 ATCGGCCATGATGTGGTTGCGAATCTCAGGCGTCCAGAGGCCGCGAGAG-ATGAGGTCCT 59160
Query 146051 TGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGT 146110
||| || | | ||| || || | |||||||||||||||||||| | | |||| ||
Sbjct 59159 TGACCAGGTGCGCGTTAACGACGTTGAACTCGCCGGCGAGAACGCGGCGCGAGTACATGT 59100
Query 146111 TGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAG 146170
||||||| || ||||| || | |||| ||| ||||| ||||||| || | || || |
Sbjct 59099 TGCTGGTAAAAGGCTCAAAGGCCTCGCAGTTTCCGAGAATCTGCGAAGTTGAGGCCGTGG 59040
Query 146171 GCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207
||||| ||| || || | ||||| | ||||||||
Sbjct 59039 GCATGGGCGCGACAAGGAGCGAGTTACGTACGCCGTG 59003
>seq53
Length=241909
Score = 116 bits (128), Expect = 4e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| |||| | |||||| || || ||||| || ||
Sbjct 193413 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 193354
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || || |||||||||||| || ||||||||
Sbjct 193353 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 193294
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||||| |||||| |||| ||| | || || || || || ||
Sbjct 193293 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 193234
Query 127097 TTTACAAAAATCTG 127110
|||||||| |||||
Sbjct 193233 TTTACAAAGATCTG 193220
>seq1
Length=1674554
Score = 100 bits (110), Expect = 3e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| |||| || |||||| || || ||||| || ||
Sbjct 772334 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 772275
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | ||||||||||| || || || ||||| |||||| ||| ||||||||
Sbjct 772274 GCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGGATCTTCTGCTTC 772215
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074
| | |||| |||||||| |||||| |||| |||
Sbjct 772214 ACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGT 772177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498886109280
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