Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 143 3e-29 seq49 129 6e-25 seq61 116 4e-21 seq53 116 4e-21 seq1 100 3e-16 >seq7 Length=852142 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| |||| | |||||| || || ||||| || ||| Sbjct 77229 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77170 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || || |||||||| ||| || ||||||||| Sbjct 77169 GCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTG 77110 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| | |||||| || | ||| | || |||||||| ||||| Sbjct 77109 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTC 77050 Query 127097 TTTACAAAAATCTGCAT 127113 ||||||||||||||||| Sbjct 77049 TTTACAAAAATCTGCAT 77033 Score = 141 bits (156), Expect = 9e-29 Identities = 179/245 (73%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 126869 ACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTT 126928 ||||||||| |||| |||| || | || | ||||| || | ||||||||| || Sbjct 77955 ACCATTTAC-ATAC-----CACCACGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTC 77902 Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 || || ||||| |||| | ||||| ||| || ||||| || |||||| | || | Sbjct 77901 TGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGA 77842 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 ||||||||||| || || || |||||||||||| ||| |||||||||| | || | Sbjct 77841 CGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATC 77782 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 ||||||| |||||| |||| || | || ||||| |||||||| || ||||| ||| Sbjct 77781 GTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATC 77722 Query 127109 TGCAT 127113 ||||| Sbjct 77721 TGCAT 77717 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| |||| | |||||| || || ||||| || ||| Sbjct 77457 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 77398 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || || |||||||||||| || ||||||||| Sbjct 77397 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTG 77338 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| |||||| |||| || | || ||||| |||||||| Sbjct 77337 ACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTC 77278 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 77277 TTGACAAAGATCTGCAT 77261 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| |||| | |||||| || || ||||| || ||| Sbjct 77001 GTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 76942 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || ||||||||||| ||| ||| ||||||||| Sbjct 76941 GCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTG 76882 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||||| | |||||| || | ||| | |||||||| || || || Sbjct 76881 ACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTC 76822 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 76821 TTAACGAAGATCTGCAT 76805 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| | |||||| || || ||||| || || Sbjct 77685 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCT 77626 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || || |||||||| ||| ||| ||||||||| Sbjct 77625 GCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTTCTGCTTG 77566 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| | |||||| || | ||| | || ||||| || || || Sbjct 77565 ACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGTGAGGGTC 77506 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 77505 TTGACGAAGATCTGCAT 77489 >seq49 Length=285000 Score = 129 bits (142), Expect = 6e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | |||||||| || || || ||||| |||| Sbjct 148342 CCACCGCGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTG 148283 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||| | |||||||||||||| || Sbjct 148282 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGG 148223 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| |||||||| | | |||| |||||||| |||||| Sbjct 148222 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACA 148163 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 127110 |||| ||| | || ||||| || || || || || || ||||| Sbjct 148162 TCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq61 Length=193651 Score = 116 bits (128), Expect = 4e-21 Identities = 305/457 (67%), Gaps = 10/457 (2%) Strand=Plus/Minus Query 145756 GTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTC 145815 || ||||| ||||| | || |||||||| || ||||| ||||||||| || | Sbjct 59454 GTACGCAGGTAGTAGAGACCCGTCTTGAGGCCGCGCTTCCACGAGTAAAAGTG---GCAC 59398 Query 145816 GACATGACCGAGT--ACGTGGGT-TCGGCGACAAACAAATTTAGAGATTGGCTCTGATCA 145872 || ||| | | |||| || ||||| | | | || || || || ||| ||| Sbjct 59397 GAAGTGAGCTTGCCAACGTTGGCCTCGGCCATGTAAATGTTGAGCGACTGCGACTGGTCA 59338 Query 145873 ATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCA-CTTTGATTTAATTTCCCATGC 145931 || || | | | |||||||| || | ||| || | ||| | || || | | ||||| | Sbjct 59337 ATAAAGGCACCACGGTCGGCCGCAAGGTCAATGAGGCAACGCTGCTTGA-TCTCCCACAC 59279 Query 145932 GGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATT 145991 || || | || |||||| || | || || || ||||||||||| || || Sbjct 59278 CGTCTTGTAAAGTGCCTTGAGGTCATCCGGGATGACGGAGATGTTCTGCACCGAACCGCG 59219 Query 145992 TTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTT-CAAGTCTACGAGGGCCT 146050 ||||||| || | |||||| | || || || | | | | || | |||| ||| Sbjct 59218 ATCGGCCATGATGTGGTTGCGAATCTCAGGCGTCCAGAGGCCGCGAGAG-ATGAGGTCCT 59160 Query 146051 TGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGT 146110 ||| || | | ||| || || | |||||||||||||||||||| | | |||| || Sbjct 59159 TGACCAGGTGCGCGTTAACGACGTTGAACTCGCCGGCGAGAACGCGGCGCGAGTACATGT 59100 Query 146111 TGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAG 146170 ||||||| || ||||| || | |||| ||| ||||| ||||||| || | || || | Sbjct 59099 TGCTGGTAAAAGGCTCAAAGGCCTCGCAGTTTCCGAGAATCTGCGAAGTTGAGGCCGTGG 59040 Query 146171 GCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 ||||| ||| || || | ||||| | |||||||| Sbjct 59039 GCATGGGCGCGACAAGGAGCGAGTTACGTACGCCGTG 59003 >seq53 Length=241909 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| | |||||| || || ||||| || || Sbjct 193413 GTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 193354 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || || |||||||||||| || |||||||| Sbjct 193353 GCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTC 193294 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| |||||| |||| ||| | || || || || || || Sbjct 193293 ACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTACCCGTGAGGGTC 193234 Query 127097 TTTACAAAAATCTG 127110 |||||||| ||||| Sbjct 193233 TTTACAAAGATCTG 193220 >seq1 Length=1674554 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || |||||| || || ||||| || || Sbjct 772334 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCG 772275 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || || ||||| |||||| ||| |||||||| Sbjct 772274 GCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGGATCTTCTGCTTC 772215 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 | | |||| |||||||| |||||| |||| ||| Sbjct 772214 ACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGT 772177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498886109280