Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 9e-16 >seq7 Length=852142 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || ||||| | || || || Sbjct 77242 CACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTC 77183 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | || ||||| || || || || || || ||||| || Sbjct 77182 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTG 77123 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || || |||| || | || | |||||| |||| |||||| || || || | || | Sbjct 77122 AATCTTCTGCTTGA-CGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCT 77064 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| ||||| ||||||||||| ||||| Sbjct 77063 TGCCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001380687120