Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq61 284 1e-71
seq25 87.8 2e-12
seq1 86.0 8e-12
>seq61
Length=193651
Score = 284 bits (314), Expect = 1e-71
Identities = 703/1047 (67%), Gaps = 35/1047 (3%)
Strand=Plus/Minus
Query 116251 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 116310
||||| || || ||||| | ||| | ||||| || | ||| || | || ||| |
Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGC---TGCGCTCGGCC 58696
Query 116311 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367
||| ||||| ||||| || | || ||||| | ||||| || ||||| ||||| ||
Sbjct 58695 TCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTG 58636
Query 116368 GTGATTTCAT-GAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCA---TTGACATACT 116422
|||| |||| || || | | || ||| | ||| |||||| |||||| |||
Sbjct 58635 GTGACATCATAGAGGCCCT--GAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACT 58581
Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482
| ||||| ||| || ||||| || || |||| | ||||||| |||||||||| |
Sbjct 58580 TGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGA 58521
Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542
| || ||||| || | || || ||| ||| |||| | |||||| || || |||||
Sbjct 58520 TGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGC 58461
Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602
||| || || |||||| | |||||| | ||| |||||||| | ||| | ||||||
Sbjct 58460 GGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAA 58401
Query 116603 TAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662
| | ||| | || ||| ||| || | | || ||||||| ||||||
Sbjct 58400 TCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGC 58341
Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCT 116721
|||||| ||| ||||| || || | || | || |||||||| |||| |
Sbjct 58340 GCTCGTAGAGCTCCTTGAACTCGTCGCC-ATAGACGTCCGAGAGCCCCTTGGCCTCGTTC 58282
Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781
|| || ||||| | ||| | | |||| || |||| |||||| ||||| |||| |
Sbjct 58281 GGGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACC 58222
Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCA 116839
|||||||| | ||||| || || ||| | |||| || | || || || || |
Sbjct 58221 CAGAGCGCGTAAAAGAGGTCGCGC--GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGA 58164
Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 116899
||| | |||||| || || || ||||| || || ||||||| || | || ||||
Sbjct 58163 GCTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCT 58104
Query 116900 TGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTG 116956
|||| | || |||||| || || | ||||| |||| || ||||| ||||| |
Sbjct 58103 TGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGG 58044
Query 116957 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG--GCTCTGAC 117014
| | ||| || | || | ||| || || || | ||| ||| | || | |
Sbjct 58043 GCACGATGCCGTTGGACTTGCCGTTGGTGCC--GGCCACGTAGCTTCCCGAAGCGCGAAT 57986
Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC-TC-CGTG 117072
| |||||||| | |||||| || || || |||| ||||| | |||||| || || |
Sbjct 57985 GTTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAG 57926
Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGA 117131
| ||| | |||| || || |||||||| |||| || ||| | |||||||||||||||
Sbjct 57925 CGTCTG--GAAGATGCCCTCAATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGA 57869
Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191
||| || || | || ||||| ||||||||||| || || || ||||| | || |
Sbjct 57868 CATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTT 57809
Query 117192 TTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGAT 117251
||| |||||| | | ||||||||| | | || | |||||||||| ||| ||||| |
Sbjct 57808 TTGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCAC 57749
Query 117252 TGAGACCCGCATAAACATGTATTGGGG 117278
||||| ||||| | ||| | |||||
Sbjct 57748 AGAGACACGCATGAGCATCTGCTGGGG 57722
>seq25
Length=536601
Score = 87.8 bits (96), Expect = 2e-12
Identities = 242/367 (66%), Gaps = 7/367 (2%)
Strand=Plus/Minus
Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761
|| ||||| || || ||||||| || || | |||||| | ||| ||||||||| |||
Sbjct 70713 CGGTCAAAACGTCCAGGGCGGACCAGCGCCTTGTCAAGCACATCGTAGCGGTTCGTTGCC 70654
Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAG-AGTTGATT 12820
|| ||||| || |||| |||| | ||||| ||||| | || | || || || ||
Sbjct 70653 GCCATGACGACAATGCGTTTCTCCGACCCAAAGCCGTCCAT-TGAGGCCAGCAGCTGGTT 70595
Query 12821 GATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCACTGCGTTGCTTACCGA 12879
|| ||||||||||| || || ||| | | || | || ||||| ||| || |
Sbjct 70594 GAGCGTTTGTTCACGCTCCTCGTTCATGCTGAAT----TCGGCGCTGCGGCTCTTGCCAA 70539
Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939
|| ||||||||||| | || | | |||||| | ||||| | |||| |
Sbjct 70538 GAGCATCAATTTCGTCGAAAAAGAGAACACACGGCGCCGCCTTGCGGGCCTTTGCAAACA 70479
Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 12999
|| ||||| | |||| || ||| | ||| || ||||| | | | || |
Sbjct 70478 GATTACGCACACGGCTGGCGCCCCGCCCCGCGTACACTTCGACAAAGTCGCTACCCGAGC 70419
Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059
| |||| ||||| | | | ||||| || |||||||| ||||| | |||||| ||||
Sbjct 70418 AGTGGAAGAAGGCCATGCCGCATTCATTGGCCATGGCTCGCGCGAGCATGGTCTTGCCCG 70359
Query 13060 TCCCTGG 13066
| || ||
Sbjct 70358 TGCCGGG 70352
>seq1
Length=1674554
Score = 86.0 bits (94), Expect = 8e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 177699 CATCCTTGATCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGC 177758
|||| ||| || | | ||| |||||| | | ||||||| | | ||||||||||||||
Sbjct 1190901 CATCATTGGTCTCCACGGAGAACTCCTTGCTGAAGATGTTGGCAAGCTTGGCACCGTAGC 1190842
Query 177759 CATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGT 177818
| ||||||||||| |||| | ||| | | |||| || | ||| || ||| || ||||
Sbjct 1190841 CGTTGCGTCCACCGACAACACGCTTTTGGGTGTCCTCAAAATTTTCACCCGTCAGGAGGT 1190782
Query 177819 GACCAAAGGTAAGTTCTGGA 177838
| |||||| ||||| |||
Sbjct 1190781 GGCCAAAGACGAGTTCGGGA 1190762
Score = 82.4 bits (90), Expect = 9e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 176819 TTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACT 176878
|| ||||| || |||||||| |||||| || ||||| || || | | ||| |||||
Sbjct 1396234 TTGCCGCGAAGCGGGAACACGCCGTAGCCGTCGCGACCCACGACGGGCAAACCTGCAACG 1396175
Query 176879 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCC 176938
|| || | ||| ||||| ||||| || || | ||||| || || | || | |||
Sbjct 1396174 GCAAGTGCCTTGGCGGAGTCACCTTCAGTGAGAATGAGGGTCGCCTCGCTCGAGCGCGCC 1396115
Query 176939 GTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAAT 176973
||||||||| ||| ||||| || | |||||| ||
Sbjct 1396114 GTCCCCGCCCAGTTGGCATCCTCGAGCTTGGGGAT 1396080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613504730633520
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