Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq61 284 1e-71 seq25 87.8 2e-12 seq1 86.0 8e-12 >seq61 Length=193651 Score = 284 bits (314), Expect = 1e-71 Identities = 703/1047 (67%), Gaps = 35/1047 (3%) Strand=Plus/Minus Query 116251 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 116310 ||||| || || ||||| | ||| | ||||| || | ||| || | || ||| | Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGC---TGCGCTCGGCC 58696 Query 116311 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 ||| ||||| ||||| || | || ||||| | ||||| || ||||| ||||| || Sbjct 58695 TCCTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTG 58636 Query 116368 GTGATTTCAT-GAAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCA---TTGACATACT 116422 |||| |||| || || | | || ||| | ||| |||||| |||||| ||| Sbjct 58635 GTGACATCATAGAGGCCCT--GAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACT 58581 Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 | ||||| ||| || ||||| || || |||| | ||||||| |||||||||| | Sbjct 58580 TGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGA 58521 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542 | || ||||| || | || || ||| ||| |||| | |||||| || || ||||| Sbjct 58520 TGATCTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGC 58461 Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 116602 ||| || || |||||| | |||||| | ||| |||||||| | ||| | |||||| Sbjct 58460 GGTTGCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAA 58401 Query 116603 TAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662 | | ||| | || ||| ||| || | | || ||||||| |||||| Sbjct 58400 TCTGGTACCAGAGGTCCTGGGCGCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGC 58341 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCT 116721 |||||| ||| ||||| || || | || | || |||||||| |||| | Sbjct 58340 GCTCGTAGAGCTCCTTGAACTCGTCGCC-ATAGACGTCCGAGAGCCCCTTGGCCTCGTTC 58282 Query 116722 GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 116781 || || ||||| | ||| | | |||| || |||| |||||| ||||| |||| | Sbjct 58281 GGGCAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACC 58222 Query 116782 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCA 116839 |||||||| | ||||| || || ||| | |||| || | || || || || | Sbjct 58221 CAGAGCGCGTAAAAGAGGTCGCGC--GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGA 58164 Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 116899 ||| | |||||| || || || ||||| || || ||||||| || | || |||| Sbjct 58163 GCTCAATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCT 58104 Query 116900 TGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTG 116956 |||| | || |||||| || || | ||||| |||| || ||||| ||||| | Sbjct 58103 TGCGCTTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGG 58044 Query 116957 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG--GCTCTGAC 117014 | | ||| || | || | ||| || || || | ||| ||| | || | | Sbjct 58043 GCACGATGCCGTTGGACTTGCCGTTGGTGCC--GGCCACGTAGCTTCCCGAAGCGCGAAT 57986 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC-TC-CGTG 117072 | |||||||| | |||||| || || || |||| ||||| | |||||| || || | Sbjct 57985 GTTGTGGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAG 57926 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGA 117131 | ||| | |||| || || |||||||| |||| || ||| | ||||||||||||||| Sbjct 57925 CGTCTG--GAAGATGCCCTCAATCGAGTCGTCCTTCATGTGC-ACGAGGAAGCAGCTCGA 57869 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191 ||| || || | || ||||| ||||||||||| || || || ||||| | || | Sbjct 57868 CATCTGCGGGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTT 57809 Query 117192 TTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGAT 117251 ||| |||||| | | ||||||||| | | || | |||||||||| ||| ||||| | Sbjct 57808 TTGCGACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCAC 57749 Query 117252 TGAGACCCGCATAAACATGTATTGGGG 117278 ||||| ||||| | ||| | ||||| Sbjct 57748 AGAGACACGCATGAGCATCTGCTGGGG 57722 >seq25 Length=536601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 242/367 (66%), Gaps = 7/367 (2%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || || ||||||| || || | |||||| | ||| ||||||||| ||| Sbjct 70713 CGGTCAAAACGTCCAGGGCGGACCAGCGCCTTGTCAAGCACATCGTAGCGGTTCGTTGCC 70654 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAG-AGTTGATT 12820 || ||||| || |||| |||| | ||||| ||||| | || | || || || || Sbjct 70653 GCCATGACGACAATGCGTTTCTCCGACCCAAAGCCGTCCAT-TGAGGCCAGCAGCTGGTT 70595 Query 12821 GATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCACTGCGTTGCTTACCGA 12879 || ||||||||||| || || ||| | | || | || ||||| ||| || | Sbjct 70594 GAGCGTTTGTTCACGCTCCTCGTTCATGCTGAAT----TCGGCGCTGCGGCTCTTGCCAA 70539 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGA 12939 || ||||||||||| | || | | |||||| | ||||| | |||| | Sbjct 70538 GAGCATCAATTTCGTCGAAAAAGAGAACACACGGCGCCGCCTTGCGGGCCTTTGCAAACA 70479 Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 12999 || ||||| | |||| || ||| | ||| || ||||| | | | || | Sbjct 70478 GATTACGCACACGGCTGGCGCCCCGCCCCGCGTACACTTCGACAAAGTCGCTACCCGAGC 70419 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | |||| ||||| | | | ||||| || |||||||| ||||| | |||||| |||| Sbjct 70418 AGTGGAAGAAGGCCATGCCGCATTCATTGGCCATGGCTCGCGCGAGCATGGTCTTGCCCG 70359 Query 13060 TCCCTGG 13066 | || || Sbjct 70358 TGCCGGG 70352 >seq1 Length=1674554 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177699 CATCCTTGATCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGC 177758 |||| ||| || | | ||| |||||| | | ||||||| | | |||||||||||||| Sbjct 1190901 CATCATTGGTCTCCACGGAGAACTCCTTGCTGAAGATGTTGGCAAGCTTGGCACCGTAGC 1190842 Query 177759 CATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGT 177818 | ||||||||||| |||| | ||| | | |||| || | ||| || ||| || |||| Sbjct 1190841 CGTTGCGTCCACCGACAACACGCTTTTGGGTGTCCTCAAAATTTTCACCCGTCAGGAGGT 1190782 Query 177819 GACCAAAGGTAAGTTCTGGA 177838 | |||||| ||||| ||| Sbjct 1190781 GGCCAAAGACGAGTTCGGGA 1190762 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 176819 TTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACT 176878 || ||||| || |||||||| |||||| || ||||| || || | | ||| ||||| Sbjct 1396234 TTGCCGCGAAGCGGGAACACGCCGTAGCCGTCGCGACCCACGACGGGCAAACCTGCAACG 1396175 Query 176879 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCC 176938 || || | ||| ||||| ||||| || || | ||||| || || | || | ||| Sbjct 1396174 GCAAGTGCCTTGGCGGAGTCACCTTCAGTGAGAATGAGGGTCGCCTCGCTCGAGCGCGCC 1396115 Query 176939 GTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAAT 176973 ||||||||| ||| ||||| || | |||||| || Sbjct 1396114 GTCCCCGCCCAGTTGGCATCCTCGAGCTTGGGGAT 1396080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504730633520