Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq30 120 5e-22 >seq30 Length=443502 Score = 120 bits (132), Expect = 5e-22 Identities = 302/446 (68%), Gaps = 25/446 (6%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||| || ||||||||||||||||||| ||| || || ||||| | | || ||||| Sbjct 288096 CTTTTCAAAAAAGTTGGTCTTGCCCTGCATCGAGATGAGGTCCATCCAGTCAAAGGGGTT 288155 Query 159709 CTTCACGTGATA---GCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765 | |||| || | ||| ||| ||||| | | | || | ||| |||||||| Sbjct 288156 TTGCACGCCGTAAATGGCCTT---AAAGCCGAGCGACTTGACCAGACGGTCAGCCACAAA 288212 Query 159766 TTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTT 159824 | |||||| || | ||| | | |||| || || | ||| ||||||||||| | Sbjct 288213 CTTGATGTA-CTGCTGCATGAGGGTAGAGTTCATGCCGATAAGCTCGACGGGGAGCGCGT 288271 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGG-TC-ACAATCTGCGAG-ACACGTT 159881 | || | ||||| |||||| ||||| || || || | |||| || | || || Sbjct 288272 CGGAGATGAACTCGCACTCAATGTCGACGGC--CGACTCGATGATCT-CGCGCACGCGGG 288328 Query 159882 CGTACCCCGGC---TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 | | | ||| | || | || || || |||||||| |||||||| || Sbjct 288329 CCTCCGAGGGCGGGTGGCGGAGCTTGCGG------AAGAGGAGGCAAGCAAAGTCAGTGT 288382 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 ||| |||||||| || ||||| ||||||||| | | ||||||||||||||| || | Sbjct 288383 GCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGC 288442 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCC 160057 || ||||||||||| || | |||| |||| || ||| ||||| || |||||||| Sbjct 288443 GCTTCTTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCG 288501 Query 160058 GCAAACGCCACGAGCCTCTCACCAAA 160083 ||||| | || || | |||| |||| Sbjct 288502 GCAAAGCCAACAAGGCGCTCAGCAAA 288527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151999500320