Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq30 120 5e-22
>seq30
Length=443502
Score = 120 bits (132), Expect = 5e-22
Identities = 302/446 (68%), Gaps = 25/446 (6%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||| || ||||||||||||||||||| ||| || || ||||| | | || |||||
Sbjct 288096 CTTTTCAAAAAAGTTGGTCTTGCCCTGCATCGAGATGAGGTCCATCCAGTCAAAGGGGTT 288155
Query 159709 CTTCACGTGATA---GCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAA 159765
| |||| || | ||| ||| ||||| | | | || | ||| ||||||||
Sbjct 288156 TTGCACGCCGTAAATGGCCTT---AAAGCCGAGCGACTTGACCAGACGGTCAGCCACAAA 288212
Query 159766 TTCGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTT 159824
| |||||| || | ||| | | |||| || || | ||| ||||||||||| |
Sbjct 288213 CTTGATGTA-CTGCTGCATGAGGGTAGAGTTCATGCCGATAAGCTCGACGGGGAGCGCGT 288271
Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGG-TC-ACAATCTGCGAG-ACACGTT 159881
| || | ||||| |||||| ||||| || || || | |||| || | || ||
Sbjct 288272 CGGAGATGAACTCGCACTCAATGTCGACGGC--CGACTCGATGATCT-CGCGCACGCGGG 288328
Query 159882 CGTACCCCGGC---TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938
| | | ||| | || | || || || |||||||| |||||||| ||
Sbjct 288329 CCTCCGAGGGCGGGTGGCGGAGCTTGCGG------AAGAGGAGGCAAGCAAAGTCAGTGT 288382
Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998
||| |||||||| || ||||| ||||||||| | | ||||||||||||||| || |
Sbjct 288383 GCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGC 288442
Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCC 160057
|| ||||||||||| || | |||| |||| || ||| ||||| || ||||||||
Sbjct 288443 GCTTCTTGAGCCAAAAGATCG-CGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCG 288501
Query 160058 GCAAACGCCACGAGCCTCTCACCAAA 160083
||||| | || || | |||| ||||
Sbjct 288502 GCAAAGCCAACAAGGCGCTCAGCAAA 288527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795151999500320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |