Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq53 156 1e-32 seq7 145 2e-29 seq49 132 1e-25 seq1 122 2e-22 >seq53 Length=241909 Score = 156 bits (172), Expect = 1e-32 Identities = 169/223 (76%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| | || Sbjct 193437 CGAAGGCGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 193378 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| |||||||||||||| |||||||| || || ||| || Sbjct 193377 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCC 193318 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||||| |||| |||||| | | || ||||| | Sbjct 193317 TCCTTGTCCTGAATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 193258 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG-GTAC 199630 ||||| |||||||||||||| || || ||||| || || |||| Sbjct 193257 GTGATGGTCTTACCCGTGAGGGTCTTTACAAAGATCTGTGTAC 193215 >seq7 Length=852142 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GT 199467 ||||| | || || ||||||||||| |||||||| |||| ||||||||| || || || Sbjct 77253 CGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGT 77195 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| || |||||||||||||||||||| || || || || Sbjct 77194 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACC 77135 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||||| ||| || | |||||| | | || ||||| | Sbjct 77134 CTCCTTATCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAG 77075 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || |||||||| || Sbjct 77074 GGTGATGGTCTTGCCGGTGAGAGTCTTTACAAAAATCTG 77036 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GTCCTTCCATC 199476 || |||||||||||||| |||||||| |||| ||||||||| || || || | || || Sbjct 77472 AGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGTGCGGCCGTC 77414 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || |||||||| || |||||||||||||||||||| || || ||| || || || Sbjct 77413 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTC 77354 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| ||||| ||| || | |||||| | | || ||||| | || || || Sbjct 77353 CTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGT 77294 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || ||||| || || Sbjct 77293 CTTGCCAGTCAGAGTCTTGACAAAGATCTG 77264 Score = 129 bits (142), Expect = 1e-24 Identities = 171/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GT 199467 ||||| | || || ||||||||||| |||||||| |||| ||||||||| || || || Sbjct 77025 CGAAGGCGGAGCACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGCGT 76967 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| || |||||||||||||||||||| || || ||| || Sbjct 76966 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCC 76907 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||||| ||| || | ||||| | | || ||||| | Sbjct 76906 CTCCTTATCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAG 76847 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTT 199641 ||||| || || |||||||| || || || || || || ||| || ||||| Sbjct 76846 GGTGATGGTTTTGCCCGTGAGGGTCTTAACGAAGATCTG---CATCTTGGCCTT 76796 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || |||||||| |||| ||||||||| | || | || || Sbjct 77700 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 77641 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||||||||||||||| || || ||| || || ||| Sbjct 77640 TCGAGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCC 77581 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| ||| || | |||||| | | || ||||| | ||||| ||| Sbjct 77580 TGGATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTC 77521 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 77520 TTGCCCGTGAGGGTCTTGACGAAGATCTG 77492 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAA-GT 199467 ||||| | || || |||||||| || |||||||| |||| ||||||||| || || || Sbjct 77937 CGAAGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTC-GCTAAGTGT 77879 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || |||||||| || ||||| |||||||||||||| || || ||| || Sbjct 77878 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACC 77819 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||||| ||| || | ||||| | | || ||||| | Sbjct 77818 CTCCTTGTCCTGGATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAG 77759 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||| || || Sbjct 77758 AGTAATAGTCTTGCCAGTCAGAGTCTTGACAAAGATCTG 77720 >seq49 Length=285000 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || |||||||| || |||||||| |||| ||||||||| | || Sbjct 148336 CGAAGGCGGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTG 148277 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||||||||||||||| || || || || Sbjct 148276 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCC 148217 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||||| |||| |||||| | | || ||||| | Sbjct 148216 TCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 148157 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || || || Sbjct 148156 GTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATCTG 148119 >seq1 Length=1674554 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| || || Sbjct 772358 CGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTG 772299 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || |||||||| || || || || Sbjct 772298 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCC 772239 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| |||||||| |||| |||||| | | || ||||| | Sbjct 772238 TCTTTGTCCTGGATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGG 772179 Query 199589 GTGATCGTCT 199598 ||||| |||| Sbjct 772178 GTGATAGTCT 772169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916736211574