Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq30 260 1e-64
seq49 143 3e-29
seq7 140 3e-28
seq53 138 1e-27
seq1 107 2e-18
seq11 96.9 3e-15
>seq30
Length=443502
Score = 260 bits (288), Expect = 1e-64
Identities = 422/602 (70%), Gaps = 4/602 (1%)
Strand=Plus/Plus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
|||||||||||| |||| ||||||||| | | ||||| |||||| || || |
Sbjct 288366 GCAAGCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAG 288425
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013
||| |||||||||||||| || ||||||||||| || ||| |||| ||| ||||||||
Sbjct 288426 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAA 288485
Query 133014 GACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG 133072
|| ||| || ||||| || |||||| || |||||||| | || ||| |||| |
Sbjct 288486 GATGCCTTCCACGGCGGC-AAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGT 288544
Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132
| || |||||| |||||| | ||||| || |||||||||| || | ||| |
Sbjct 288545 CCATGTAGCGCATCGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCAT 288604
Query 133133 TCAACAAACGGAGTTTCTC-TTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191
| || | || | | ||||| | || | || | ||||||||||||||| ||| |||
Sbjct 288605 TGAAAAGACTGTGCTTCTCGGTGCG-GTCGCGAATGTAGGTGTCGATGAGCAGCGAGTAC 288663
Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251
| || | || | |||||| ||||| || || |||||||||||||| |||||||| |
Sbjct 288664 ACCTCGGCATGAATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGC 288723
Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311
|| ||| || | || ||| |||| || ||| |||||||||||| ||
Sbjct 288724 ACACTCACCTCACTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAA 288783
Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371
|| || || |||||||||||||||| || || ||||| | | ||| || ||
Sbjct 288784 GCAAAGAACGCCAGCACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATCGAGTCAAAG 288843
Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431
|||||| |||| | |||||| |||||||| | ||||| ||||| |||||||| ||
Sbjct 288844 TCGCGCTGATCCTGGCCCAGGTCGACCTCCTCAGCCGTCCAGAACGAGGCCTCGGCCTTC 288903
Query 133432 TTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491
|||||| ||| || ||| | || || || || | |||||| ||| |||||
Sbjct 288904 TTGTACGCGTCCCAGATATCCTGGTGCTGGATAGGGAACAGCACAAAGCGGTCCGGGTTG 288963
Query 133492 TC 133493
||
Sbjct 288964 TC 288965
>seq49
Length=285000
Score = 143 bits (158), Expect = 3e-29
Identities = 161/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
|| || ||||| || || || |||||||| ||||||||| |||| |||||| || | |||
Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178
Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | |||| | || | || |||| ||||| ||||| || ||| |||| || ||
Sbjct 148179 ACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCA 148237
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||||||||||||
Sbjct 148238 GCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 148297
Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| ||||| | || || || | ||||| ||
Sbjct 148298 CCAGAAGGAGTCTACCCTCCACCTCGTGCTCCG 148330
>seq7
Length=852142
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| ||||||||| | || |||||| | |
Sbjct 77489 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77548
Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || | || |||| || || ||||| |||||| | || ||
Sbjct 77549 GACACCATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCA 77607
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| |||||||||
Sbjct 77608 GCAGCGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 77667
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 77668 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 77703
Score = 136 bits (150), Expect = 4e-27
Identities = 163/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||||||||||||||||||| | || |||||| |
Sbjct 76802 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCT 76861
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | |||| | || | || |||| || || ||||| |||||| | ||
Sbjct 76862 TCGGACACTATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGA 76920
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|| ||||| ||||| | ||| ||||| ||||| || |||| ||||| || | ||||||
Sbjct 76921 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTA 76980
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| | || || || | ||||| ||
Sbjct 76981 CAACATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCG 77019
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| || || || |||| |||||| || |
Sbjct 77717 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77776
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || | || |||| ||||| ||||| |||||| | || ||
Sbjct 77777 GACACGATTGAGAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCA 77835
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| ||| ||||| ||||| || || | ||||| || | |||||||||
Sbjct 77836 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAA 77895
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | ||||| || ||||||| ||
Sbjct 77896 CATCCAGAAGGAGTCTACGCTCCACCTGGTGCTCCG 77931
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || ||||| || ||||| ||||| ||||||||| | || |||||| | |
Sbjct 77033 ATGCAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77092
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || || | || || ||||| || ||| | || ||
Sbjct 77093 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCA 77151
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| ||||| || | |||||||||
Sbjct 77152 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77211
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 77212 CATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCG 77247
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| || || || |||| |||||| || |
Sbjct 77261 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77320
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || || | ||||| ||||| |||||| | || ||
Sbjct 77321 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 77379
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||| ||||| ||||| || |||| ||||| || | |||||||||
Sbjct 77380 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77439
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || | ||||| ||
Sbjct 77440 CATCCAGAAGGAGTCTACTCTCCACCTTGTGCTCCG 77475
>seq53
Length=241909
Score = 138 bits (152), Expect = 1e-27
Identities = 160/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306
|| || || ||||| || |||||||| || ||||||||| |||| |||||| || | |||
Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279
Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | |||| | || | || || | ||||| ||||| |||||| | || || ||
Sbjct 193280 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCA 193338
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||||||||||||
Sbjct 193339 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 193398
Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| ||||| | || || || |||| || ||
Sbjct 193399 CCAGAAGGAGTCCACCCTCCACCTGGTCCTTCG 193431
>seq1
Length=1674554
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 38277 ACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTC 38336
|| |||||| |||| |||||| || | |||| | | | | | || | || ||||
Sbjct 772171 ACTATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAG 772230
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||||||||| || ||| | || || ||||| || || | ||| ||||| ||||||||
Sbjct 772231 GACAAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAG 772290
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||| || | ||||||||||||||| ||||| | || || || |||| ||
Sbjct 772291 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTC 772350
Query 38457 CG 38458
||
Sbjct 772351 CG 772352
>seq11
Length=765042
Score = 96.9 bits (106), Expect = 3e-15
Identities = 126/169 (75%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 107669 GTTGCCCAGGTCGCCGACGTGCCTGATC-TCGGCGTCGGGCGCGCCGTGG-TCGCGCTTC 107726
|||||| ||||||||| |||| | | || || | ||||||||||||||| || ||
Sbjct 58607 GTTGCCAAGGTCGCCGGCGTGGC-GCTCGTCATCCTCGGGCGCGCCGTGGGTCTTGCCG- 58664
Query 107727 GTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGC 107786
| ||||||| | || |||||| | ||||||| |||| ||||||| |||| |||
Sbjct 58665 GACGGGTTGTAGTGGCCGCCGGTGCTGGCGCAGCCGGAGCTCACGTCGCCAAACTGGTGG 58724
Query 107787 ACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCGAGCACGTAGCCGCTCA 107835
| ||||||||||||| |||| ||| ||||||| || | |||| |||
Sbjct 58725 ATGTGGAAGCCGTGCTTGCCGGGCGTCAGGCCGGTGACCTCGCCGGTCA 58773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170786804480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |