Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq30 260 1e-64 seq49 143 3e-29 seq7 140 3e-28 seq53 138 1e-27 seq1 107 2e-18 seq11 96.9 3e-15 >seq30 Length=443502 Score = 260 bits (288), Expect = 1e-64 Identities = 422/602 (70%), Gaps = 4/602 (1%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 |||||||||||| |||| ||||||||| | | ||||| |||||| || || | Sbjct 288366 GCAAGCAAAGTCAGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAG 288425 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| |||||||||||||| || ||||||||||| || ||| |||| ||| |||||||| Sbjct 288426 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAA 288485 Query 133014 GACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG 133072 || ||| || ||||| || |||||| || |||||||| | || ||| |||| | Sbjct 288486 GATGCCTTCCACGGCGGC-AAAGCCAACAAGGCGCTCAGCAAAGGTGCAAATGTTGCCGT 288544 Query 133073 CGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 | || |||||| |||||| | ||||| || |||||||||| || | ||| | Sbjct 288545 CCATGTAGCGCATCGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCAT 288604 Query 133133 TCAACAAACGGAGTTTCTC-TTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191 | || | || | | ||||| | || | || | ||||||||||||||| ||| ||| Sbjct 288605 TGAAAAGACTGTGCTTCTCGGTGCG-GTCGCGAATGTAGGTGTCGATGAGCAGCGAGTAC 288663 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 | || | || | |||||| ||||| || || |||||||||||||| |||||||| | Sbjct 288664 ACCTCGGCATGAATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGC 288723 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 || ||| || | || ||| |||| || ||| |||||||||||| || Sbjct 288724 ACACTCACCTCACTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAA 288783 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371 || || || |||||||||||||||| || || ||||| | | ||| || || Sbjct 288784 GCAAAGAACGCCAGCACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATCGAGTCAAAG 288843 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 |||||| |||| | |||||| |||||||| | ||||| ||||| |||||||| || Sbjct 288844 TCGCGCTGATCCTGGCCCAGGTCGACCTCCTCAGCCGTCCAGAACGAGGCCTCGGCCTTC 288903 Query 133432 TTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTT 133491 |||||| ||| || ||| | || || || || | |||||| ||| ||||| Sbjct 288904 TTGTACGCGTCCCAGATATCCTGGTGCTGGATAGGGAACAGCACAAAGCGGTCCGGGTTG 288963 Query 133492 TC 133493 || Sbjct 288964 TC 288965 >seq49 Length=285000 Score = 143 bits (158), Expect = 3e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || ||||| || || || |||||||| ||||||||| |||| |||||| || | ||| Sbjct 148119 CAGATCTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 148178 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | |||| | || | || |||| ||||| ||||| || ||| |||| || || Sbjct 148179 ACCATCGAGAACG-TGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCA 148237 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| ||||| | ||| ||||| ||||| || |||| ||||| |||| |||||||||||| Sbjct 148238 GCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 148297 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||| | || || || | ||||| || Sbjct 148298 CCAGAAGGAGTCTACCCTCCACCTCGTGCTCCG 148330 >seq7 Length=852142 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | || |||||| | | Sbjct 77489 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77548 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| || || ||||| |||||| | || || Sbjct 77549 GACACCATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGTATTCCCCCTGATCA 77607 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| ||||| |||| ||||||||| Sbjct 77608 GCAGCGTCTCATCTTCGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAA 77667 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 77668 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCG 77703 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||||||||||||| | || |||||| | Sbjct 76802 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAAACCATCACCCTTGATGTCGAGCCT 76861 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || | || |||| || || ||||| |||||| | || Sbjct 76862 TCGGACACTATTGAGAACG-TCAAGCAGAAGATCCAGGATAAGGAGGGCATTCCCCCTGA 76920 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | ||| ||||| ||||| || |||| ||||| || | |||||| Sbjct 76921 TCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTA 76980 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| | || || || | ||||| || Sbjct 76981 CAACATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCG 77019 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || || || |||| |||||| || | Sbjct 77717 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77776 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| |||||| | || || Sbjct 77777 GACACGATTGAGAACG-TCAAGCAGAAGATCCAGGACAAGGAGGGTATTCCCCCTGATCA 77835 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 77836 GCAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACACTTAGCGACTACAA 77895 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | ||||| || ||||||| || Sbjct 77896 CATCCAGAAGGAGTCTACGCTCCACCTGGTGCTCCG 77931 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || ||||| ||||| ||||||||| | || |||||| | | Sbjct 77033 ATGCAGATTTTTGTAAAGACTCTCACCGGCAAGACCATCACCCTTGATGTCGAGCCTTCG 77092 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | || || ||||| || ||| | || || Sbjct 77093 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGATAAGGAGGGTATCCCCCCTGATCA 77151 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 77152 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77211 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 77212 CATCCAGAAGGAGTCTACTCTCCACCTCGTGCTCCG 77247 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || || || |||| |||||| || | Sbjct 77261 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACTATTACTCTCGATGTCGAGCCCTCG 77320 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| |||||| | || || Sbjct 77321 GACACCATTGAGAACG-TCAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 77379 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 77380 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTTAGCGACTACAA 77439 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || | ||||| || Sbjct 77440 CATCCAGAAGGAGTCTACTCTCCACCTTGTGCTCCG 77475 >seq53 Length=241909 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38247 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGAC 38306 || || || ||||| || |||||||| || ||||||||| |||| |||||| || | ||| Sbjct 193220 CAGATCTTTGTAAAGACCCTCACGGGTAAGACCATCACCCTCGATGTCGAGCCCTCGGAC 193279 Query 38307 AGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | |||| | || | || || | ||||| ||||| |||||| | || || || Sbjct 193280 ACCATCGAGAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCA 193338 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 ||| ||||| | ||| ||||| ||||| || |||| ||||| |||| |||||||||||| Sbjct 193339 GCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 193398 Query 38426 CCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| ||||| | || || || |||| || || Sbjct 193399 CCAGAAGGAGTCCACCCTCCACCTGGTCCTTCG 193431 >seq1 Length=1674554 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 38277 ACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTC 38336 || |||||| |||| |||||| || | |||| | | | | | || | || |||| Sbjct 772171 ACTATCACCCTCGATGTCGAGCCCTCGGACACCATCGAGAATGTGAAGCAGAAGATCCAG 772230 Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||||||||| || ||| | || || ||||| || || | ||| ||||| |||||||| Sbjct 772231 GACAAAGAGGGTATCCCCCCTGATCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAG 772290 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || | ||||||||||||||| ||||| | || || || |||| || Sbjct 772291 GACGGCCGCACGCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTC 772350 Query 38457 CG 38458 || Sbjct 772351 CG 772352 >seq11 Length=765042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 107669 GTTGCCCAGGTCGCCGACGTGCCTGATC-TCGGCGTCGGGCGCGCCGTGG-TCGCGCTTC 107726 |||||| ||||||||| |||| | | || || | ||||||||||||||| || || Sbjct 58607 GTTGCCAAGGTCGCCGGCGTGGC-GCTCGTCATCCTCGGGCGCGCCGTGGGTCTTGCCG- 58664 Query 107727 GTCGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTCGCGTCGCCGAACTCGTGC 107786 | ||||||| | || |||||| | ||||||| |||| ||||||| |||| ||| Sbjct 58665 GACGGGTTGTAGTGGCCGCCGGTGCTGGCGCAGCCGGAGCTCACGTCGCCAAACTGGTGG 58724 Query 107787 ACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCGAGCACGTAGCCGCTCA 107835 | ||||||||||||| |||| ||| ||||||| || | |||| ||| Sbjct 58725 ATGTGGAAGCCGTGCTTGCCGGGCGTCAGGCCGGTGACCTCGCCGGTCA 58773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170786804480