Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq84 297 2e-75 >seq84 Length=130366 Score = 297 bits (328), Expect = 2e-75 Identities = 748/1128 (66%), Gaps = 12/1128 (1%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||| ||||| ||||| || || ||||| || || |||||||||||||| || | Sbjct 22937 GATAGCGGCCTGGACGGTGGCGCCGTAGGCAACAGCCTCATCGGGGTTGATGCTGCGGCA 22996 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | || || ||||| || | ||| | ||| || | || ||||| || || || Sbjct 22997 GGGCTCCTTGCCGTTGAAGAACTCCTTGAGCATGGCCTGGACCTTGGGGATACGGGTGGA 23056 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTT-CGATTTATCGATCTTTGAGTCTCGAAGTG 7199 || ||||| | || || || | || | || || ||||| | ||| || || Sbjct 23057 GCCGCCGACGAGGACAATCTCGTGGACGGAGCCCTTGCTC-ATCTTGGCGTCACGGAGAA 23115 Query 7200 TTTTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTCCTCAAAACGT 7258 || ||||| || ||||| | || ||| ||||||| ||| |||||||| || Sbjct 23116 CCTTCTCGACGGGCTCCATGG-TGGACTTGAAGTAGTCCATGTTCAGGTCCTCAAAGCGG 23174 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 ||||| | ||||| | ||| || || || ||| | | ||||| || ||| Sbjct 23175 GCACGCGAGATGGACGAGGTGAAGTCGACACCCTCGAAGAGGCCGTCAATCTCGATGTGA 23234 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | || || | | || | ||| ||||| |||||||| || || || || | ||| || Sbjct 23235 GCCTGGGCGGAAGCCGAGAGCGTGCGCTTGGCGCGCTCGCAGGCAGTGCGGAGACGGCGC 23294 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAG 7438 ||| ||| ||| | || || || ||||| || || || ||||| | |||| Sbjct 23295 TTGGCGCGCTCGTTGCTCGACATGTCCTTCTTGAACTTGCGCTTGAACTCAGCCATGAAG 23354 Query 7439 TG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 || |||| | || | ||||| || || ||||| | ||| || || || ||||| || Sbjct 23355 TGCTCGACG-AGGCGGTTGTCGAAGTCCTCGCCACCAAGGTGGGTGTCACCAGCGGTGGC 23413 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 ||||| || ||||| || | |||||| | | | ||| ||||| || ||||||||||| Sbjct 23414 CTTGACCTCGAAGATGCCCTCCTCAATGGTGAGGAGCGAGACATCGAAGGTACCACCACC 23473 Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 || || || ||||| ||||| ||| | || || ||| ||||||||||| ||||| Sbjct 23474 AAGATCGAAGATGAGCACGTTGCGCTCGCCCTCCTT---CTTGTCGAGACCGTAGGCGAT 23530 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGC 7677 || || || || || || ||||| || || || ||| ||||| || || | || Sbjct 23531 GGCGGCGGCGGTGGGCTCGTTAATGATGCGGAGCACGTTGAGGCCGGCGATGACACCAGC 23590 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 || || || || || || ||||| |||||||||||||| || || || | ||| |||| Sbjct 23591 GTCCTTGGTGGCCTGGCGCTGCGAGTCGTTAAAGTAGGCAGGAACGGTGATGACGGCGTT 23650 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | |||| | || |||||| || || ||| | | ||||| ||||| ||||||||||| Sbjct 23651 CTTGACCTCCTCACCGAGGTAGCTCTCGGCGGTCTGCTTCATCTTGGTGAGAACCATCGA 23710 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGG 7857 || ||||| || | || || ||| ||||| | || || || | || | ||| Sbjct 23711 CGAGATCTCCTCCGGGGCGAAGGTCTTCTCCTCACCCTGGAACTCGACCTTGATGACGGG 23770 Query 7858 TTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTG 7917 || || | |||| ||||| | | | || | ||| | || | Sbjct 23771 CTTGTCGTTGGGGCCGGCCTCCACCTTGAAGGGGAAGAACTTGAGATCCTGCTGAGTCGA 23830 Query 7918 TTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977 | || | ||||| | ||||| |||||||| || ||||| || ||||| | ||||| Sbjct 23831 GGGATCAGCGAACTTGCGGCCGATGAGACGCTTGGCGTCAAAGACGGTGTTGTACGGGTT 23890 Query 7978 CATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGC 8037 ||| | || ||| || || || |||||||| || || | | || || || Sbjct 23891 CATCGACACCTGCGACTTGGCGGCATCACCGATAAGGCGCTCGGTGCT---GGTGAAGGC 23947 Query 8038 GACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 ||||||||| || || || || || ||||||||||| || || || || ||| ||| || Sbjct 23948 GACGTACGAGGGAGTGGTGCGGTTACCTTGGTCGTTGGCGATGATCTCCACGGAGTCATT 24007 Query 8098 TTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 |||||| ||| |||||||| ||||| || || | ||||||||||| Sbjct 24008 CTGCCAGCAGCCCACGCACGAGTACGTGGTGCCAAGGTCAATACCGAT 24055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130243590480