Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq30 118 1e-21
seq1 96.9 4e-15
>seq30
Length=443502
Score = 118 bits (130), Expect = 1e-21
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231
||||||||||||| || | | ||||| || || || |||||||| ||||| || |
Sbjct 288529 CCTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTT 288470
Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291
||||||| || | ||||||||||||||| || |||||||| || ||| ||| |||||||
Sbjct 288469 TCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACG 288410
Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| ||| || |||||||| | ||| || |||||
Sbjct 288409 AGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGC 288370
>seq1
Length=1674554
Score = 96.9 bits (106), Expect = 4e-15
Identities = 270/408 (66%), Gaps = 6/408 (1%)
Strand=Plus/Minus
Query 176689 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 176748
||||||||| ||||| || | ||| || | || | | || ||||||||||| ||
Sbjct 1192169 CTTGAGAAGCGAGGGCCAAAAATGGTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGA 1192110
Query 176749 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 176808
||| || | ||| ||||||||||||||||||| | || ||||| || | ||
Sbjct 1192109 ACCATCATGATCCTGATCCGTCATGATCATGAGATGGCCGTACCGGAGACCTTTGGTGTC 1192050
Query 176809 TTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 176868
||||| ||| || | || || |||| ||||||| ||| | | || |||| |||
Sbjct 1192049 AGTATAGTTCTTGCCGGGCTGCAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTT 1191990
Query 176869 TGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAA 176928
||| ||| || ||||| || || || || || || || || || ||
Sbjct 1191989 CTTCATGATCTGACTGTGCGAGGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGCGGAAA 1191930
Query 176929 GACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGA 176988
||| ||||||| || ||||| || ||| ||| || || || | || || || ||
Sbjct 1191929 GACGCCGTAGTTGTCACGACCGACGACACTGAGTCCGCTAATGGCCAAGGTCTTGGCGGA 1191870
Query 176989 ATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA-TTGTG-CCGTACCCGCCTTGTTC 177046
||||| || || | ||||| || ||||| | || ||| | ||| || || |||||
Sbjct 1191869 GTCACCTTCGGTGAGAATGAGGGTGCACTTTTCCGAGTTGCGACCG--CCGGCATTGTTG 1191812
Query 177047 GCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACC 177093
|| || || | ||| || || |||||||||||||| ||| ||
Sbjct 1191811 GCGTCGTCAAGCTTTTCGACGTCC-TTAATTTTGGACTTTTTCGTGCC 1191765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620739901511840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |