Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq30 118 1e-21 seq1 96.9 4e-15 >seq30 Length=443502 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||||||||| || | | ||||| || || || |||||||| ||||| || | Sbjct 288529 CCTTTGCTGAGCGCCTTGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTT 288470 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||||| || | ||||||||||||||| || |||||||| || ||| ||| ||||||| Sbjct 288469 TCTGCGCGATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACG 288410 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||| || |||||||| | ||| || ||||| Sbjct 288409 AGCTCATCAGCCGCGACGAGGGCATGCACACTGACTTTGC 288370 >seq1 Length=1674554 Score = 96.9 bits (106), Expect = 4e-15 Identities = 270/408 (66%), Gaps = 6/408 (1%) Strand=Plus/Minus Query 176689 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 176748 ||||||||| ||||| || | ||| || | || | | || ||||||||||| || Sbjct 1192169 CTTGAGAAGCGAGGGCCAAAAATGGTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGA 1192110 Query 176749 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCGAAGCTCGGAAACATC 176808 ||| || | ||| ||||||||||||||||||| | || ||||| || | || Sbjct 1192109 ACCATCATGATCCTGATCCGTCATGATCATGAGATGGCCGTACCGGAGACCTTTGGTGTC 1192050 Query 176809 TTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 176868 ||||| ||| || | || || |||| ||||||| ||| | | || |||| ||| Sbjct 1192049 AGTATAGTTCTTGCCGGGCTGCAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTT 1191990 Query 176869 TGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAA 176928 ||| ||| || ||||| || || || || || || || || || || Sbjct 1191989 CTTCATGATCTGACTGTGCGAGGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGCGGAAA 1191930 Query 176929 GACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGA 176988 ||| ||||||| || ||||| || ||| ||| || || || | || || || || Sbjct 1191929 GACGCCGTAGTTGTCACGACCGACGACACTGAGTCCGCTAATGGCCAAGGTCTTGGCGGA 1191870 Query 176989 ATCACCCTCTGTCACGATGAGTGTACACTTGCCAGA-TTGTG-CCGTACCCGCCTTGTTC 177046 ||||| || || | ||||| || ||||| | || ||| | ||| || || ||||| Sbjct 1191869 GTCACCTTCGGTGAGAATGAGGGTGCACTTTTCCGAGTTGCGACCG--CCGGCATTGTTG 1191812 Query 177047 GCATCATCCA-ATTTGGGAATACCAGTAATTTTGGACTTTCGCGTACC 177093 || || || | ||| || || |||||||||||||| ||| || Sbjct 1191811 GCGTCGTCAAGCTTTTCGACGTCC-TTAATTTTGGACTTTTTCGTGCC 1191765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739901511840