Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18 154 2e-32 seq30 87.8 2e-12 seq25 82.4 9e-11 >seq18 Length=676545 Score = 154 bits (170), Expect = 2e-32 Identities = 324/477 (68%), Gaps = 17/477 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| ||||| || ||||| | || || ||||| || |||||||| || || Sbjct 375742 CGATCGAAGCGACCGGGACGGAGGATTGCCGGGTCGAGAATGTCAACACGGTTGGTGCCG 375801 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| |||| ||| ||| ||| | || || ||||| || ||| ||||| Sbjct 375802 GCCAAGACGACAACGCC---CTCCTTGGAGGTAAAGCCATCCATCTCGACGAGTAGCTGA 375858 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA---CCACC--TGCCGAACGCTTCT 11674 || | || | ||||||||||||||| | | ||||| | || ||| Sbjct 375859 TTCAGAGTGTTCTCACGCTCATCGTTGCCGCCACTGAAGCCACCCTTTCC--ACGGGCGC 375916 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 |||| || || ||||||||||| || || || ||||| ||| || ||||| Sbjct 375917 GCGCGACGGCATCGATCTCATCGATAAAGACAATGCACGGGGCGTTCTTGCGCGCCTGGC 375976 Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 | || || || || || ||| || |||||||| ||||||||||| | ||||| | Sbjct 375977 CAAAGAGATCGCGCACGCGCGACGGACCAACACCGACGAACATCTCGATGAAGTCACTGC 376036 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 ||||| || |||||| ||| | | ||| || || | || || | ||| |||| Sbjct 376037 CAGAAATGGAAAAGAAGGGCACACTGGCCTCGCCGGCAGTAGCCTTGGCCAAGAGCGTCT 376096 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTCC 11912 | |||||||| |||| || || || | ||| || |||||||||||| ||| |||| Sbjct 376097 TGCCCGTACCGGGTGGGCCTGCCAGCAAGGCACCCTTGGGGATCTTGGCCCCAAGCTTCG 376156 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || |||||| ||| | ||||||||| || |||| |||| | |||| ||||||| Sbjct 376157 TAA--AGCGCTTAGGGTCCTTGAGGAACTCGACAAACTCCATGATTTCCACCTTGGC 376211 >seq30 Length=443502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||||||||| || ||| || || |||||||| || | ||||| ||||||||||| Sbjct 288402 GATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 288461 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAA-TAGACGCT 119646 || || ||| ||||||||||||||||| ||||| ||| ||||| || || |||| Sbjct 288462 CGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCGGC-AAAGCCAACAAGGCGCT 288520 Query 119647 CAGCAAA 119653 ||||||| Sbjct 288521 CAGCAAA 288527 >seq25 Length=536601 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| || ||||||| || || | ||||| | |||| ||||| || || Sbjct 70713 CGGTCAAAACGTCCAGGGCGGACCAGCGCCTTGTCAAGCACATCGTAGCGGTTCGTTGCC 70654 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| ||||||| |||| | || ||||||||| | || ||||||||| Sbjct 70653 GCCATGACGACAATGCGTTTCTCCGACCCAAAGCCGTCCATTGAGGCCAGCAGCTGGTTG 70594 Query 11623 ATCGTCTGTTCACGCTCATCGTT 11645 | ||| ||||||||||| ||||| Sbjct 70593 AGCGTTTGTTCACGCTCCTCGTT 70571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973629371600