Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq18 154 2e-32
seq30 87.8 2e-12
seq25 82.4 9e-11
>seq18
Length=676545
Score = 154 bits (170), Expect = 2e-32
Identities = 324/477 (68%), Gaps = 17/477 (4%)
Strand=Plus/Plus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|||||||| ||||| || ||||| | || || ||||| || |||||||| || ||
Sbjct 375742 CGATCGAAGCGACCGGGACGGAGGATTGCCGGGTCGAGAATGTCAACACGGTTGGTGCCG 375801
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619
|| | ||| |||| ||| ||| ||| | || || ||||| || ||| |||||
Sbjct 375802 GCCAAGACGACAACGCC---CTCCTTGGAGGTAAAGCCATCCATCTCGACGAGTAGCTGA 375858
Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA---CCACC--TGCCGAACGCTTCT 11674
|| | || | ||||||||||||||| | | ||||| | || |||
Sbjct 375859 TTCAGAGTGTTCTCACGCTCATCGTTGCCGCCACTGAAGCCACCCTTTCC--ACGGGCGC 375916
Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734
|||| || || ||||||||||| || || || ||||| ||| || |||||
Sbjct 375917 GCGCGACGGCATCGATCTCATCGATAAAGACAATGCACGGGGCGTTCTTGCGCGCCTGGC 375976
Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794
| || || || || || ||| || |||||||| ||||||||||| | ||||| |
Sbjct 375977 CAAAGAGATCGCGCACGCGCGACGGACCAACACCGACGAACATCTCGATGAAGTCACTGC 376036
Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854
||||| || |||||| ||| | | ||| || || | || || | ||| ||||
Sbjct 376037 CAGAAATGGAAAAGAAGGGCACACTGGCCTCGCCGGCAGTAGCCTTGGCCAAGAGCGTCT 376096
Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTCC 11912
| |||||||| |||| || || || | ||| || |||||||||||| ||| ||||
Sbjct 376097 TGCCCGTACCGGGTGGGCCTGCCAGCAAGGCACCCTTGGGGATCTTGGCCCCAAGCTTCG 376156
Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969
|| |||||| ||| | ||||||||| || |||| |||| | |||| |||||||
Sbjct 376157 TAA--AGCGCTTAGGGTCCTTGAGGAACTCGACAAACTCCATGATTTCCACCTTGGC 376211
>seq30
Length=443502
Score = 87.8 bits (96), Expect = 2e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587
||||||||| || ||| || || |||||||| || | ||||| |||||||||||
Sbjct 288402 GATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 288461
Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAA-TAGACGCT 119646
|| || ||| ||||||||||||||||| ||||| ||| ||||| || || ||||
Sbjct 288462 CGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCACGGCGGC-AAAGCCAACAAGGCGCT 288520
Query 119647 CAGCAAA 119653
|||||||
Sbjct 288521 CAGCAAA 288527
>seq25
Length=536601
Score = 82.4 bits (90), Expect = 9e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562
|| || ||||| || ||||||| || || | ||||| | |||| ||||| || ||
Sbjct 70713 CGGTCAAAACGTCCAGGGCGGACCAGCGCCTTGTCAAGCACATCGTAGCGGTTCGTTGCC 70654
Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
|| ||||| ||||||| |||| | || ||||||||| | || |||||||||
Sbjct 70653 GCCATGACGACAATGCGTTTCTCCGACCCAAAGCCGTCCATTGAGGCCAGCAGCTGGTTG 70594
Query 11623 ATCGTCTGTTCACGCTCATCGTT 11645
| ||| ||||||||||| |||||
Sbjct 70593 AGCGTTTGTTCACGCTCCTCGTT 70571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973629371600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |