Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq61 197 2e-45 seq1 136 5e-27 seq18 82.4 9e-11 >seq61 Length=193651 Score = 197 bits (218), Expect = 2e-45 Identities = 676/1042 (65%), Gaps = 25/1042 (2%) Strand=Plus/Minus Query 106283 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGT 106341 ||||| || || ||||| | || | ||| | ||| ||||| || | ||| || Sbjct 58752 GCGAGGCCCTGTACACCAATGCCGACAGGGCGGTGGCGCATGTTGCTGCGCTCG-GCCTC 58694 Query 106342 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 106401 ||| ||||| ||||| || | |||||| || |||||||| || ||||| |||| || || Sbjct 58693 CTCGACGGGGTAAAAGTTGCCGTCAATAACGCGGTTTAGGTTCTTGGTCACAACTTTGGT 58634 Query 106402 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGG 106458 || |||| || | | | ||| | |||| |||||| |||||| |||| | Sbjct 58633 GACATCATAGAGGCCCTGAAAGTCATAGGTGCC---CTCTTCGATGTTGACAAACTTGCG 58577 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 |||| ||| || |||| ||||||||||| ||||||| | |||||||| | || Sbjct 58576 AAGGTTGATCGAGGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGATGAT 58517 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || || || | ||| || ||| || | || | ||||| ||||| ||| ||| Sbjct 58516 CTCCGTGCAGAGGTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGCGGTT 58457 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| || |||||| | ||||| ||||| |||||||| |||| | ||||||| Sbjct 58456 GCATGCGTCCTTGAAAAGCATAAAGGGCACACCCGTCTCGATCTGGCAGCTGAGAATCTG 58397 Query 106639 CTTCCACACATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGCCTCGTACTTT 106696 | ||| | || ||| | || | | | | | || |||||| |||||| Sbjct 58396 GTACCAGAGGTCCTGGGC--GCGCATCGTCTTGCGACCGCGACCCTCCTTCTCGTAGCGC 58339 Query 106697 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 106756 |||||| | | ||||| || || |||| ||||| || |||| || || Sbjct 58338 TCGTAGAGCTCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGTTCGGG 58279 Query 106757 CAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 106816 || || || | ||| | | |||| || |||| |||||||||||| || | ||| Sbjct 58278 CAAAAGAGCGTCCAGGTGCTGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCCAG 58219 Query 106817 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 106876 || | ||||||| || | || ||| || | ||| ||||| || | |||| Sbjct 58218 AGCGCGTAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCA 58159 Query 106877 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG- 106935 | || || || || || ||||| |||||||| || | || | || ||||| || Sbjct 58158 ATAAAGTCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGC 58099 Query 106936 --ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATA 106993 | || | || | || ||||| || ||| |||| || ||||| ||||| || | Sbjct 58098 TTGCCGCCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACG 58039 Query 106994 ATACCATCTGATTGACCATTTGTCCCCCGAATACG-AGATT-TATTGGCTCTCACATCAT 107051 || || | || | || || || ||| ||| || || || | | | | Sbjct 58038 ATGCCGTTGGACTTGCCGTTGGT--GCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGT 57981 Query 107052 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 107111 |||||| | ||||| || || || |||| ||||| |||| ||| | || || Sbjct 57980 GGATGTTGACACCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGCGTCT 57921 Query 107112 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 107171 |||| || | || ||||| ||||| || | |||||||| || |||||||||| Sbjct 57920 GGAAGATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCG 57861 Query 107172 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG---AATGAACATACCTTGGG 107228 | | || ||||| || |||||||| || || || ||||| || |||| | ||| | Sbjct 57860 GGCGCGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTT---TTGCG 57804 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 ||||| ||| ||| ||||| | | || |||||||||||| |||||| || | | | Sbjct 57803 ACATCATGTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACAGAGA 57744 Query 107289 CACGCATAAACATGTATTGGGG 107310 ||||||| | ||| | ||||| Sbjct 57743 CACGCATGAGCATCTGCTGGGG 57722 >seq1 Length=1674554 Score = 136 bits (150), Expect = 5e-27 Identities = 275/403 (68%), Gaps = 14/403 (3%) Strand=Plus/Minus Query 169139 CTTGAGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGA 169198 ||||||||| |||||| || | |||||| | || | || || ||||||||||| || Sbjct 1192169 CTTGAGAAGCGAGGGCCAAAAATGGTGGATAAAGTTCATGAGCAGTCCCTTGATGTGCGA 1192110 Query 169199 ACCATCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATC 169258 |||||||| ||| ||| ||||| ||||| ||| | || || || || | || Sbjct 1192109 ACCATCATGATCCTGATCCGTCATGATCATGAGATGGCCGTACCGGAGACCTTTGGTGTC 1192050 Query 169259 TTGGTAGTCTTTTCCTTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTT 169318 |||| || || | || || |||| ||||||| ||| | | || |||| ||| Sbjct 1192049 AGTATAGTTCTTGCCGGGCTGCAGTCCCATGATCTTCATGATGTTTTGGATTTCTTCGTT 1191990 Query 169319 -----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGA 169373 |||| ||| |||||| || || |||||||| || || || || || Sbjct 1191989 CTTCATGATCTGA-CTGTGC----GAGGCCTCGCGGACGTTGAGGAGTTTTCCTCGTAGC 1191935 Query 169374 GGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTC 169433 ||||||||||| |||| ||||| || ||||| ||| || | || | ||| || Sbjct 1191934 GGAAAGACGCCGTAGTTGTCACGACCGACGACACTGAGTCCGCTAATGGCCAAGGTCTTG 1191875 Query 169434 GCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGA-TTGCG-CCGTACCCGCCT 169491 || || ||||| || |||| ||||||||| |||||| | || ||||| ||| || || | Sbjct 1191874 GCGGAGTCACCTTCGGTGAGAATGAGGGTGCACTTTTCCGAGTTGCGACCG--CCGGCAT 1191817 Query 169492 TGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTT 169534 |||| |||||||| | ||| | | ||||||||||||| Sbjct 1191816 TGTTGGCGTCGTCAAGCTTTTCGACGTCCTTAATTTTGGACTT 1191774 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 170242 CATCCTTGATCACAATGGAAAACTCC--GATGAGTAGATGTTGGTCAACTTGGCACCATA 170299 |||| ||| || | | ||| |||||| | ||| ||||||||| | ||||||||| || Sbjct 1190901 CATCATTGGTCTCCACGGAGAACTCCTTGCTGA--AGATGTTGGCAAGCTTGGCACCGTA 1190844 Query 170300 GCCGTTGCGACCTCCCACAATTCTCTTCTTTGTGTCATCATAATTTGTACTCGTAAGAAG 170359 ||||||||| || || |||| | ||| | ||||| ||| ||||| || ||| || || Sbjct 1190843 GCCGTTGCGTCCACCGACAACACGCTTTTGGGTGTCCTCAAAATTTTCACCCGTCAGGAG 1190784 Query 170360 ATGCCCAAATGTAAGTTCGGGA 170381 || ||||| ||||||||| Sbjct 1190783 GTGGCCAAAGACGAGTTCGGGA 1190762 >seq18 Length=676545 Score = 82.4 bits (90), Expect = 9e-11 Identities = 186/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 |||||||| |||||||| || |||||||| || || || | ||| || ||||| Sbjct 375922 ACGGCATCGATCTCATCGATAAAGACAATGCACGGGGCGTTCTTGCGCGCCTGGCCAAAG 375981 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||||||| || | | || ||||| || |||||||| | |||| | | ||| Sbjct 375982 AGATCGCGCACGCGCGACGGACCAACACCGACGAACATCTCGATGAAGTCACTGCCAGAA 376041 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | |||||| ||| | | || || ||| | || ||| | || ||||| || Sbjct 376042 -ATGGAAAAGAAGGGCACACTGGCCTCGCCGGCAGTAGCCTTGGCCAAGAGCGTCTTGCC 376100 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA--CTTCCAAAG 9605 |||||| || || || || | ||||||| || |||||||| ||| |||| || Sbjct 376101 CGTACCGGGTGGGCCTGCCAGCAAGGCACCCTTGGGGATCTTGGCCCCAAGCTTCGTAA- 376159 Query 9606 TATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | || ||| | |||||| || || |||| ||| Sbjct 376160 -AGCGCTTAGGGTCCTTGAGGAACTCGACAAACTC 376193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978425327280