Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 156 9e-33 seq53 131 4e-25 seq49 118 2e-21 seq1 114 3e-20 >seq7 Length=852142 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||| ||| ||| || | || || ||| Sbjct 77469 ACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCG 77410 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || ||||| || || ||||| ||| Sbjct 77409 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 77350 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||||||||||||||||| || || || || |||| ||||| Sbjct 77349 ATCTTCTGCTTGACGTTCTCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTG 77290 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 77289 CCAGTCAGAGTCTTGACAAAGATCTGCAT 77261 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| ||| ||| || | || || ||| Sbjct 77241 ACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCG 77182 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || || || || || || || ||| Sbjct 77181 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGA 77122 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||||||||| || || |||||||| | ||||| Sbjct 77121 ATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTG 77062 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| ||||| || | ||||| Sbjct 77061 CCGGTGAGAGTCTTTACAAAAATCTGCAT 77033 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| ||| || || | || || ||| Sbjct 77697 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 77638 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||||||||| || || || || || || ||||| || || || || || Sbjct 77637 AGCTGCTTGCCTGCGAAGATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGG 77578 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||||||||| || || |||||||| | ||||| Sbjct 77577 ATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTG 77518 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 77517 CCCGTGAGGGTCTTGACGAAGATCTGCAT 77489 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| ||| ||| || | || || ||| Sbjct 77013 ACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCG 76954 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || |||||||| || || || || Sbjct 76953 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGG 76894 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||| ||||||||| || || |||||||| | || || Sbjct 76893 ATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTG 76834 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 76833 CCCGTGAGGGTCTTAACGAAGATCTGCAT 76805 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| ||| || | ||||| ||| Sbjct 77925 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCG 77866 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || || || ||||| || || ||||| || Sbjct 77865 AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGG 77806 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||| |||||||| || || || || |||| ||||| Sbjct 77805 ATCTTCTGCTTGACGTTCTCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTG 77746 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 77745 CCAGTCAGAGTCTTGACAAAGATCTGCAT 77717 >seq53 Length=241909 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | || || ||| Sbjct 193425 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 193366 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || ||||| || || ||||| ||| Sbjct 193365 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 193306 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| |||||||| ||||||||||| || || || ||||| | ||||| Sbjct 193305 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTA 193246 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || || | || ||||| || Sbjct 193245 CCCGTGAGGGTCTTTACAAA 193226 >seq49 Length=285000 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| ||| || || | || || ||| Sbjct 148324 ACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 148265 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || || || || || ||||| || Sbjct 148264 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGG 148205 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| |||||||| ||||||||||| || || || ||||| | ||||| Sbjct 148204 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTG 148145 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || || | || || ||||| Sbjct 148144 CCCGTAAGGGTCTTGACGAA 148125 >seq1 Length=1674554 Score = 114 bits (126), Expect = 3e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| ||| || || | || || || Sbjct 772346 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCC 772287 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| || || || || || || || || |||||||| || Sbjct 772286 AGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCAGGGGGGATACCCTCTTTGTCCTGG 772227 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||||| || ||||| ||||||||||| || || || ||||| | |||| Sbjct 772226 ATCTTCTGCTTCACATTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATAGTCT 772169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477022694974