Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq53 102 5e-17 seq49 87.8 1e-12 >seq7 Length=852142 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || |||| || ||||| || || || || Sbjct 77907 TCCTTCTGGATGTTGTAGTCGCTAAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAA 77848 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| |||||| Sbjct 77847 ATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTC 77788 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| ||||||| || || || || || || |||||||| ||| Sbjct 77787 TCAATCGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACA 77728 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 77727 AAGATCTGCATA 77716 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || | || || ||||| || || || || Sbjct 77451 TCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 77392 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| ||||||||| |||||| Sbjct 77391 ATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTCTGCTTGACGTTC 77332 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| ||||||| || || || || || || |||||||| ||| Sbjct 77331 TCAATGGTGTCCGAGGGCTCGACATCGAGAGTAATAGTCTTGCCAGTCAGAGTCTTGACA 77272 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 77271 AAGATCTGCATA 77260 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || | || || ||||| || || || || Sbjct 77223 TCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 77164 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | |||||||| || ||||||||| |||||| Sbjct 77163 ATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTCTGCTTGACGTTC 77104 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| ||||| | ||| ||||| || || ||||||||||| ||| Sbjct 77103 TCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTTACA 77044 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 77043 AAAATCTGCATA 77032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || | || || ||||| || || || || Sbjct 76995 TCCTTCTGGATGTTGTAGTCGCTAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 76936 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | |||||||| || |||||||| |||||| Sbjct 76935 ATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTATCCTGGATCTTCTGCTTGACGTTC 76876 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| ||||| | ||| |||||||| |||||||| ||||| || Sbjct 76875 TCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTAACG 76816 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 76815 AAGATCTGCATCTT 76802 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 77679 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCTGCGAAG 77620 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | |||||||| || |||||||| |||||| Sbjct 77619 ATGAGACGCTGCTGATCAGGGGGAATACCCTCCTTATCCTGGATCTTCTGCTTGACGTTC 77560 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| ||||| | ||| ||||| || |||||||| ||||| || Sbjct 77559 TCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 77500 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 77499 AAGATCTGCATA 77488 >seq53 Length=241909 Score = 102 bits (112), Expect = 5e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || | || | || || Sbjct 193425 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCG 193366 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || || || ||||| || | || | ||||||||||| | Sbjct 193365 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGA 193306 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||||| || ||| | || | || || ||| ||||||| ||| ||||| || Sbjct 193305 ATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTA 193246 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTG 34978 |||||||| ||||| ||||||||||| Sbjct 193245 CCCGTGAGGGTCTTTACAAAGATCTG 193220 >seq49 Length=285000 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 148306 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 148247 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||||| || ||| Sbjct 148246 ATGAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 148187 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| ||||||| ||| ||||| || ||||| || ||||| || Sbjct 148186 TCGATGGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACG 148127 Query 34971 AAGATCTG 34978 |||||||| Sbjct 148126 AAGATCTG 148119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632326016016