Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq91 152 4e-32 >seq91 Length=99162 Score = 152 bits (168), Expect = 4e-32 Identities = 422/638 (66%), Gaps = 8/638 (1%) Strand=Plus/Minus Query 29750 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29809 |||| ||| | || || |||||||| | ||| || | | | ||| || ||||| | Sbjct 43167 TGTTGATCTTGAGCGTAGGAAAGGGGCGGGGTTCACGCAACAACTGCTCTTTGAGCGGCT 43108 Query 29810 CCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCG-GTTCT 29868 | ||||||| ||| | |||| ||| || | ||| | || || |||| | | Sbjct 43107 CGACGTGATTTTTGTAAATGTGACAGTCGCCAATCACGTGAATGAATTCGCCCGCGCGCA 43048 Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 |||| | || | || | | || |||||| | | |||| ||| ||||||||||| Sbjct 43047 AGCCTGTGCACTTT-GCAAGGAGGTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGC 42989 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || || ||||| || || | |||||| | || ||||| ||||| || | | Sbjct 42988 ACGCCAAGACCAATGTCACCAGAACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAA 42929 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 || || |||||| | ||||||| || ||||| ||||| ||| || | ||| Sbjct 42928 ACATAGAACTGAGCAAACATGTGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGG 42869 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 ||||| || | | ||| ||||| | || | |||||| || | || || |||| | Sbjct 42868 TTCCACGCCGAGAGGATCATGCGACGATCGTTGGGGTTGGTCTTAATCGTGTGCACGA-G 42810 Query 30109 TTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGC 30167 | ||| |||| || || ||| | ||||||||||| | ||| ||||| || || Sbjct 42809 CTGCGCAAGCTGGTCGACACCCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTAGTCCGC 42750 Query 30168 TCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30227 || || |||| |||||| || || || || || || ||||| || || || | || Sbjct 42749 ACCAAAGTGCCGCCACTGAAAACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGT 42690 Query 30228 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT--TTACCCCC 30285 || ||| ||||||| | | | || | ||| || ||| | ||||| || | | | Sbjct 42689 GAGGCCGATCTTGTCGAGATATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTT 42630 Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30345 |||| | || | || |||| | | ||| ||| | |||||| || |||||||| || Sbjct 42629 TTCTTGCAGTG-TC-TTGGCGCTCGTGTCGCCTGACATGAACCAAAGAAGCTCCTCGGCG 42572 Query 30346 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 ||| | ||||||||| | ||| |||||||| || || Sbjct 42571 ACGCCGCGCCAAAAGACGCGCTTCGTCGTGAGAAGCGG 42534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615996431306