Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq91 152 4e-32
>seq91
Length=99162
Score = 152 bits (168), Expect = 4e-32
Identities = 422/638 (66%), Gaps = 8/638 (1%)
Strand=Plus/Minus
Query 29750 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29809
|||| ||| | || || |||||||| | ||| || | | | ||| || ||||| |
Sbjct 43167 TGTTGATCTTGAGCGTAGGAAAGGGGCGGGGTTCACGCAACAACTGCTCTTTGAGCGGCT 43108
Query 29810 CCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCG-GTTCT 29868
| ||||||| ||| | |||| ||| || | ||| | || || |||| | |
Sbjct 43107 CGACGTGATTTTTGTAAATGTGACAGTCGCCAATCACGTGAATGAATTCGCCCGCGCGCA 43048
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|||| | || | || | | || |||||| | | |||| ||| |||||||||||
Sbjct 43047 AGCCTGTGCACTTT-GCAAGGAGGTGCGTGAGCAAGGCGTAGGAGGCAATGTTAAAGGGC 42989
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || || ||||| || || | |||||| | || ||||| ||||| || | |
Sbjct 42988 ACGCCAAGACCAATGTCACCAGAACGCTGGTACATTTGGCACGAAAGCTCGCCCTTGGAA 42929
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048
|| || |||||| | ||||||| || ||||| ||||| ||| || | |||
Sbjct 42928 ACATAGAACTGAGCAAACATGTGGCAGGGCGGAAGCGCCATAAGGTGAAAAGCAGCCGGG 42869
Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108
||||| || | | ||| ||||| | || | |||||| || | || || |||| |
Sbjct 42868 TTCCACGCCGAGAGGATCATGCGACGATCGTTGGGGTTGGTCTTAATCGTGTGCACGA-G 42810
Query 30109 TTTTGCA-GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGC 30167
| ||| |||| || || ||| | ||||||||||| | ||| ||||| || ||
Sbjct 42809 CTGCGCAAGCTGGTCGACACCCTTGCCCGAGTAGTCATCGTGCATCGTTGTGTAGTCCGC 42750
Query 30168 TCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC 30227
|| || |||| |||||| || || || || || || ||||| || || || | ||
Sbjct 42749 ACCAAAGTGCCGCCACTGAAAACCATAGACGGGGCCGAGGTCGCCTTCCTCTCGGTCTGT 42690
Query 30228 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT--TTACCCCC 30285
|| ||| ||||||| | | | || | ||| || ||| | ||||| || | | |
Sbjct 42689 GAGGCCGATCTTGTCGAGATATTCACGGGACCCATTGCCATCCCAAATGTGGATGTTCTT 42630
Query 30286 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACG 30345
|||| | || | || |||| | | ||| ||| | |||||| || |||||||| ||
Sbjct 42629 TTCTTGCAGTG-TC-TTGGCGCTCGTGTCGCCTGACATGAACCAAAGAAGCTCCTCGGCG 42572
Query 30346 ACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
||| | ||||||||| | ||| |||||||| || ||
Sbjct 42571 ACGCCGCGCCAAAAGACGCGCTTCGTCGTGAGAAGCGG 42534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408615996431306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |