Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945.
1_202015-01-15] 322 sequences; 39,089,698 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq61 389 7e-103
seq30 143 5e-29
>seq61
Length=193651
Score = 389 bits (430), Expect = 7e-103
Identities = 1158/1747 (66%), Gaps = 81/1747 (5%)
Strand=Plus/Minus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755
||| || ||||| |||||| || || | | | ||| || || | ||| ||||
Sbjct 59359 GTTGAGCGACTGCGACTGGTCAATAAAGGCACCACGGTCGGCCGCAAGGTCAATGAGGCA 59300
Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815
| ||| || ||||||||| |||||| | | | | |||||||| || |||| | |||
Sbjct 59299 ACGCTGCTTGATCTCCCACACCGTCTTGTAAAGTGCCTTGAGGTCATCCGGGATGACGGA 59240
Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCA-GCTGCAG--GCGCATGTCCTCGTTCCA 212872
|||||||||||| || || | | || || | || | ||| || || ||||
Sbjct 59239 GATGTTCTGCACCGAACCGCGATC---GGCCATGATGTGGTTGCGAATCTCAGGCGTCCA 59183
Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932
|||||| | | ||| |||||||||||| | ||| || | | ||| || || |
Sbjct 59182 GAGGCCGCGAGAGATGAGGTCCTTGACCAGGTGCGCGTTAACGACGTTGAACTCGCCGGC 59123
Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992
||| || | | | ||| | ||| || | ||||| | | |||| ||| || ||
Sbjct 59122 GAGAACGCGGCGCGAGTACATGTTGCTGGTAAAAGGCTCAAAGGCCTCGCAGTTTCCGAG 59063
Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052
|||||| | ||| ||| ||||||||||| || || ||||| ||| | || |||||
Sbjct 59062 AATCTGCGAAGTTGAGGCCGTGGGCATGGGCGCGACAAGGAGCGAGTTACGTACGCCGTG 59003
Query 213053 CTCGCCGATGAGGCGC---CGAAGC-TCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGT 213108
|| || |||| | ||||| ||| |||||||||| | | | ||| |||
Sbjct 59002 CT-GC--ATGACATCCTGGCGAAGAGTCT-CCCAGTCCCAGCCGAGCTCCGGGT--TCGG 58949
Query 213109 CCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAG 213168
| ||| ||||||| | |||||||| || |||| | ||||| ||| |||| | | |
Sbjct 58948 C-TTCTCGTTCCAGAGATCAAACTGGAACTTGCCCTCGCTCATGGGCGAGCCCGGAAAGG 58890
Query 213169 AGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCC-TGCAGGGCAGCGTAGTAG 213227
| ||| |||| | |||||||||||||||||| || || |||||| | | ||||
Sbjct 58889 ACTCGTAATGGCCCTCCTCCTTGGCCAGCTCGCACGAGGCGGTGCAGG-CGCCAAAGTAA 58831
Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG------ACGTGAAGGGC 213281
||||| || || || || | ||| | || ||||| ||| ||| | || |
Sbjct 58830 ATGGTCTCGAAGATGTCACGGTTCAATTTGCGCGCCTCCGGGCTCTCAAACGGGTAGCGA 58771
Query 213282 ATCATCATG----CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCT 213337
| | |||| |||||| | || ||||| || || ||||||| || |
Sbjct 58770 AGCTCCATGAGAGCGTTGG----------CGAGGCCCTGTACACCAATGCCGACAGGGCG 58721
Query 213338 GTGTCTCAGGTTAGACTTGGAGCA--CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATC 213395
||| | || ||| || | | |||||| | |||||||||||||| ||| || |
Sbjct 58720 GTGGCGCATGTTG--CTGCGCTCGGCCTCCTCGACGGGGTAAAAGTTGCCGTCAATAACG 58663
Query 213396 TTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACG 213455
||| ||||| ||| | ||||||||||||| ||| || | | | | | |
Sbjct 58662 CGGTTTAGGTTCTTGGTCACAACTTTGGTGACATCATAGAGGCCCT-GAAAGTCAT-AGG 58605
Query 213456 TAGCCCCCGTCC---TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCC 213512
| |||| | || | ||||||| | ||| ||| ||||||||||||||| ||
Sbjct 58604 T-GCCCTCTTCGATGTTGACAAACTTGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCG 58546
Query 213513 ACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTG 213572
||||| | | | | |||||||| |||||||| ||||| ||||| | | |||| ||
Sbjct 58545 ACCTCATCCGGGGCAGTGTACTCGATGATCTCCGTGCAGAGGTTCGAGGACTTGATGATG 58486
Query 213573 CCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGA 213631
|| ||||||| ||||| ||||| ||| | ||| | |||||| | ||||| ||||
Sbjct 58485 CCAAGGTTCTTCTGGTTCGACTT-GCGGTTGCATGCGTCCTTGAAAAGCATAAAGGGCAC 58427
Query 213632 CCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG 213691
|| ||||| | |||| | || |||||| |||||||| ||||| | | || |
Sbjct 58426 ACCCGTCTCGATCTGGCAGCTGAGAATCTGGTACCAGAGGT-CCTGGGCGCG--CATCGT 58370
Query 213692 CCTG--ACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC 213749
| || || || | | | |||||| | ||||||||||| ||||| |||| |||
Sbjct 58369 CTTGCGACCGCGACCCTCCTT--CTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCA 58312
Query 213750 CAGACCCTGTCC---AGTCCC--GGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT 213804
|||| |||| || ||| || | | | |||| || | ||| ||||| | ||
Sbjct 58311 TAGAC---GTCCGAGAGCCCCTTGGCCTCGTT-CGGG-CAAAAGAGCGTCCAGGTGCTGT 58257
Query 213805 -CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863
| ||| ||| | || |||||| ||||| |||||||| |||||| || ||||| |
Sbjct 58256 TCGCCTC-GACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGC 58198
Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923
| | |||| ||| || ||| ||||| || || | |||||| || ||| ||
Sbjct 58197 GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCA 58138
Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCGCC---CTGGTCCACC 213980
||||| ||||| | ||| |||||||||| |||| | ||||||||| |||||||||
Sbjct 58137 TGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACG 58078
Query 213981 AGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040
| |||| |||||||| |||||| | ||| || | |||||||||| ||||||
Sbjct 58077 TAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTG 58018
Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100
|| || || | || || || || | | |||| ||| || || ||||| |||
Sbjct 58017 GTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCG 57958
Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTC-ACAGTCTCCATGATGCCGGCCATGCTGTC 214159
|||||||||||||| ||||| || ||| | |||| | |||||| | || |||
Sbjct 57957 GCGTACTTGGAGATGCGCGCGCA-CGTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGTC 57899
Query 214160 ATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAA 214219
|| | | || || | |||||||||||| | ||| || | | | || | ||||||
Sbjct 57898 GTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGAA 57839
Query 214220 AAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279
|||||||| |||| || | | ||||| | || | | |||||||||| | | |
Sbjct 57838 GAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGGC 57779
Query 214280 TGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCT 214339
| ||||| | ||||||||| | || | | ||| ||||| |||||||| |
Sbjct 57778 ACGGTCAATGTCTTCCTTGTGGATACCCACAGAGACACGCATGAGCATCTGCTGGGGGCG 57719
Query 214340 CTCTATGG--GTCCT-TTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCC 214396
||| || || | | | | ||||||||||||| |||||||| || |||||||| ||
Sbjct 57718 CTC---GGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCC 57662
Query 214397 AAAGTAG 214403
|||||||
Sbjct 57661 AAAGTAG 57655
>seq30
Length=443502
Score = 143 bits (158), Expect = 5e-29
Identities = 551/855 (64%), Gaps = 19/855 (2%)
Strand=Plus/Plus
Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901
||| || || || | || ||||| ||||| ||||| |||| || ||||||| |||||
Sbjct 288081 GTACTCGCCAACGCGCTTTTCAAAAAAGTTGGTCTTGCCCTGCATCGAGATGAGGTCCAT 288140
Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961
|| |||||||| | | || | | | ||| | | | | ||| |
Sbjct 288141 CCAGTCAAAGGGGTTTTGCACGCCGTAAATGGCCTTAAAGCCGAGCGACTTGACCAGACG 288200
Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021
|| || || ||| |||||| | ||||||||| ||||||||| || || ||
Sbjct 288201 GTCAGCCACAAACTTGATGTACTGCTGCATGAGGGTAGAGTTCATGCCGATAAGCTCGAC 288260
Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081
||| | || | | || ||||| ||| || | ||||| | | | ||||
Sbjct 288261 GGGGAGCGCGTCGGAGATGAACTCGCACTCAATGTCGACGGCCGACTCGATGATCTCGCG 288320
Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141
||||||| ||| ||||| || ||| || |||| |||| | ||| ||||||||
Sbjct 288321 CACGCGGGCCTCCGAGGGCGGGTGGCGGAG---CTTGCGGAAGAGGAGGCAAGCAAAGTC 288377
Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201
|||||| ||| ||||| |||||||||||| ||||||| ||| ||| || |||||||
Sbjct 288378 AGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAG 288437
Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261
|| | || |||||||| || || || |||||||||||| ||||||||||| |||||
Sbjct 288438 GCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCAC 288497
Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCCAGGAAA 48320
|| || || | || | ||| | |||| || | ||| | || || |
Sbjct 288498 GGCGGCAAAGCCAACAAGGCGCTCAGC-AAAGGTGCAAATGTTGCCGTCCATGTAGCGCA 288556
Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380
|||||| | ||||||| | | ||| |||| ||| | ||| ||| || | |
Sbjct 288557 TCGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTGT 288616
Query 48381 TGCACTCACCTGCGTCCGC-AACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAG 48436
||| |||| ||| || ||||| |||||||| | ||||| ||| |
Sbjct 288617 GCTTCTC-GGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGC---GAGTACACCTCGGCA 288672
Query 48437 TGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACT 48496
|| | ||||| || || |||||||| ||||| ||| | ||||| ||| |||
Sbjct 288673 TGAATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACTCACC 288732
Query 48497 TCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAG 48556
|| | | || |||||| || ||||| ||| || || || || | |||||||||
Sbjct 288733 TCACTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAAGCAAAGAAC 288792
Query 48557 GCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA--GAG-CATTCCAGCCCTGT 48613
|| || || || || | || || ||||| | ||| | ||| || || |||
Sbjct 288793 GCCAGCACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATCGAGTCAAAGTCGCGCTG- 288851
Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673
|| | ||||||||| || || || | |||||||| || || || || ||||||
Sbjct 288852 --ATCCTGGCCCAGGTCGACCTCCTCAGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTAC 288909
Query 48674 ATGCCCCATATGTCC 48688
| |||| || |||
Sbjct 288910 GCGTCCCAGATATCC 288924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931529050580480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |