Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq61 389 7e-103 seq30 143 5e-29 >seq61 Length=193651 Score = 389 bits (430), Expect = 7e-103 Identities = 1158/1747 (66%), Gaps = 81/1747 (5%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || ||||| |||||| || || | | | ||| || || | ||| |||| Sbjct 59359 GTTGAGCGACTGCGACTGGTCAATAAAGGCACCACGGTCGGCCGCAAGGTCAATGAGGCA 59300 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||| || ||||||||| |||||| | | | | |||||||| || |||| | ||| Sbjct 59299 ACGCTGCTTGATCTCCCACACCGTCTTGTAAAGTGCCTTGAGGTCATCCGGGATGACGGA 59240 Query 212816 GATGTTCTGCACAGACCCCCTGTGTATGGTCA-GCTGCAG--GCGCATGTCCTCGTTCCA 212872 |||||||||||| || || | | || || | || | ||| || || |||| Sbjct 59239 GATGTTCTGCACCGAACCGCGATC---GGCCATGATGTGGTTGCGAATCTCAGGCGTCCA 59183 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 |||||| | | ||| |||||||||||| | ||| || | | ||| || || | Sbjct 59182 GAGGCCGCGAGAGATGAGGTCCTTGACCAGGTGCGCGTTAACGACGTTGAACTCGCCGGC 59123 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||| || | | | ||| | ||| || | ||||| | | |||| ||| || || Sbjct 59122 GAGAACGCGGCGCGAGTACATGTTGCTGGTAAAAGGCTCAAAGGCCTCGCAGTTTCCGAG 59063 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 |||||| | ||| ||| ||||||||||| || || ||||| ||| | || ||||| Sbjct 59062 AATCTGCGAAGTTGAGGCCGTGGGCATGGGCGCGACAAGGAGCGAGTTACGTACGCCGTG 59003 Query 213053 CTCGCCGATGAGGCGC---CGAAGC-TCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGT 213108 || || |||| | ||||| ||| |||||||||| | | | ||| ||| Sbjct 59002 CT-GC--ATGACATCCTGGCGAAGAGTCT-CCCAGTCCCAGCCGAGCTCCGGGT--TCGG 58949 Query 213109 CCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAG 213168 | ||| ||||||| | |||||||| || |||| | ||||| ||| |||| | | | Sbjct 58948 C-TTCTCGTTCCAGAGATCAAACTGGAACTTGCCCTCGCTCATGGGCGAGCCCGGAAAGG 58890 Query 213169 AGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCC-TGCAGGGCAGCGTAGTAG 213227 | ||| |||| | |||||||||||||||||| || || |||||| | | |||| Sbjct 58889 ACTCGTAATGGCCCTCCTCCTTGGCCAGCTCGCACGAGGCGGTGCAGG-CGCCAAAGTAA 58831 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG------ACGTGAAGGGC 213281 ||||| || || || || | ||| | || ||||| ||| ||| | || | Sbjct 58830 ATGGTCTCGAAGATGTCACGGTTCAATTTGCGCGCCTCCGGGCTCTCAAACGGGTAGCGA 58771 Query 213282 ATCATCATG----CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCT 213337 | | |||| |||||| | || ||||| || || ||||||| || | Sbjct 58770 AGCTCCATGAGAGCGTTGG----------CGAGGCCCTGTACACCAATGCCGACAGGGCG 58721 Query 213338 GTGTCTCAGGTTAGACTTGGAGCA--CTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATC 213395 ||| | || ||| || | | |||||| | |||||||||||||| ||| || | Sbjct 58720 GTGGCGCATGTTG--CTGCGCTCGGCCTCCTCGACGGGGTAAAAGTTGCCGTCAATAACG 58663 Query 213396 TTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACG 213455 ||| ||||| ||| | ||||||||||||| ||| || | | | | | | Sbjct 58662 CGGTTTAGGTTCTTGGTCACAACTTTGGTGACATCATAGAGGCCCT-GAAAGTCAT-AGG 58605 Query 213456 TAGCCCCCGTCC---TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCC 213512 | |||| | || | ||||||| | ||| ||| ||||||||||||||| || Sbjct 58604 T-GCCCTCTTCGATGTTGACAAACTTGCGAAGGTTGATCGAGGCCAGGTTGCAAACAGCG 58546 Query 213513 ACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTG 213572 ||||| | | | | |||||||| |||||||| ||||| ||||| | | |||| || Sbjct 58545 ACCTCATCCGGGGCAGTGTACTCGATGATCTCCGTGCAGAGGTTCGAGGACTTGATGATG 58486 Query 213573 CCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGA 213631 || ||||||| ||||| ||||| ||| | ||| | |||||| | ||||| |||| Sbjct 58485 CCAAGGTTCTTCTGGTTCGACTT-GCGGTTGCATGCGTCCTTGAAAAGCATAAAGGGCAC 58427 Query 213632 CCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG 213691 || ||||| | |||| | || |||||| |||||||| ||||| | | || | Sbjct 58426 ACCCGTCTCGATCTGGCAGCTGAGAATCTGGTACCAGAGGT-CCTGGGCGCG--CATCGT 58370 Query 213692 CCTG--ACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC 213749 | || || || | | | |||||| | ||||||||||| ||||| |||| ||| Sbjct 58369 CTTGCGACCGCGACCCTCCTT--CTCGTAGCGCTCGTAGAGCTCCTTGAACTCGTCGCCA 58312 Query 213750 CAGACCCTGTCC---AGTCCC--GGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT 213804 |||| |||| || ||| || | | | |||| || | ||| ||||| | || Sbjct 58311 TAGAC---GTCCGAGAGCCCCTTGGCCTCGTT-CGGG-CAAAAGAGCGTCCAGGTGCTGT 58257 Query 213805 -CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTG 213863 | ||| ||| | || |||||| ||||| |||||||| |||||| || ||||| | Sbjct 58256 TCGCCTC-GACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGCGTAAAAGAGGTCGCGC 58198 Query 213864 GTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCG 213923 | | |||| ||| || ||| ||||| || || | |||||| || ||| || Sbjct 58197 GCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAAAGTCTTCGACGTCGGCA 58138 Query 213924 TGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCGCC---CTGGTCCACC 213980 ||||| ||||| | ||| |||||||||| |||| | ||||||||| ||||||||| Sbjct 58137 TGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCGCCGCCCTGGTCCACG 58078 Query 213981 AGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTG 214040 | |||| |||||||| |||||| | ||| || | |||||||||| |||||| Sbjct 58077 TAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGGACTTGCCGTTG 58018 Query 214041 GTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCG 214100 || || || | || || || || | | |||| ||| || || ||||| ||| Sbjct 58017 GTGCCGGCCACGTAGCTTCCCGAAGCGCGAATGTTGTGGATGTTGACACCAATGCCGCCG 57958 Query 214101 GCGTACTTGGAGATCATGGCGCAGCGCCTC-ACAGTCTCCATGATGCCGGCCATGCTGTC 214159 |||||||||||||| ||||| || ||| | |||| | |||||| | || ||| Sbjct 57957 GCGTACTTGGAGATGCGCGCGCA-CGTCTCGAGCGTCTGGAAGATGCCCTCAATCGAGTC 57899 Query 214160 ATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAA 214219 || | | || || | |||||||||||| | ||| || | | | || | |||||| Sbjct 57898 GTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCGCGGGGTACCGGCGTTGAA 57839 Query 214220 AAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 |||||||| |||| || | | ||||| | || | | |||||||||| | | | Sbjct 57838 GAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCATGTTGTAGGTCTCAATGGC 57779 Query 214280 TGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCT 214339 | ||||| | ||||||||| | || | | ||| ||||| |||||||| | Sbjct 57778 ACGGTCAATGTCTTCCTTGTGGATACCCACAGAGACACGCATGAGCATCTGCTGGGGGCG 57719 Query 214340 CTCTATGG--GTCCT-TTGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCC 214396 ||| || || | | | | ||||||||||||| |||||||| || |||||||| || Sbjct 57718 CTC---GGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCGCTCGAGCGTCTTGAAGCC 57662 Query 214397 AAAGTAG 214403 ||||||| Sbjct 57661 AAAGTAG 57655 >seq30 Length=443502 Score = 143 bits (158), Expect = 5e-29 Identities = 551/855 (64%), Gaps = 19/855 (2%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | || ||||| ||||| ||||| |||| || ||||||| ||||| Sbjct 288081 GTACTCGCCAACGCGCTTTTCAAAAAAGTTGGTCTTGCCCTGCATCGAGATGAGGTCCAT 288140 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || |||||||| | | || | | | ||| | | | | ||| | Sbjct 288141 CCAGTCAAAGGGGTTTTGCACGCCGTAAATGGCCTTAAAGCCGAGCGACTTGACCAGACG 288200 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || || ||| |||||| | ||||||||| ||||||||| || || || Sbjct 288201 GTCAGCCACAAACTTGATGTACTGCTGCATGAGGGTAGAGTTCATGCCGATAAGCTCGAC 288260 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 ||| | || | | || ||||| ||| || | ||||| | | | |||| Sbjct 288261 GGGGAGCGCGTCGGAGATGAACTCGCACTCAATGTCGACGGCCGACTCGATGATCTCGCG 288320 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 ||||||| ||| ||||| || ||| || |||| |||| | ||| |||||||| Sbjct 288321 CACGCGGGCCTCCGAGGGCGGGTGGCGGAG---CTTGCGGAAGAGGAGGCAAGCAAAGTC 288377 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 |||||| ||| ||||| |||||||||||| ||||||| ||| ||| || ||||||| Sbjct 288378 AGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAAAAGGTGAGGCCCGGCATGAG 288437 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || |||||||| || || || |||||||||||| ||||||||||| ||||| Sbjct 288438 GCCGCGCTTCTTGAGCCAAAAGATCGCGCAGAAAGAGCCAGAAAAGAAGATGCCTTCCAC 288497 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGC-GTTCTTGTCTGAGATCCAGGAAA 48320 || || || | || | ||| | |||| || | ||| | || || | Sbjct 288498 GGCGGCAAAGCCAACAAGGCGCTCAGC-AAAGGTGCAAATGTTGCCGTCCATGTAGCGCA 288556 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 |||||| | ||||||| | | ||| |||| ||| | ||| ||| || | | Sbjct 288557 TCGCCCACTGCGCCTTCTCCCGCACGCACGGCAAAGTCGTAAGGGCATTGAAAAGACTGT 288616 Query 48381 TGCACTCACCTGCGTCCGC-AACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAG 48436 ||| |||| ||| || ||||| |||||||| | ||||| ||| | Sbjct 288617 GCTTCTC-GGTGCGGTCGCGAATGTAGGTGTCGATGAGCAGC---GAGTACACCTCGGCA 288672 Query 48437 TGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACT 48496 || | ||||| || || |||||||| ||||| ||| | ||||| ||| ||| Sbjct 288673 TGAATGTTCTCGATGGCCATCTGGAAGCCGTAAAAGCAGCGCGCCTCCGGCACACTCACC 288732 Query 48497 TCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAG 48556 || | | || |||||| || ||||| ||| || || || || | ||||||||| Sbjct 288733 TCACTACAAAAGTTCTCCACCACGTTCTCGAGGACGATGCCGTCCGAGGAAGCAAAGAAC 288792 Query 48557 GCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA--GAG-CATTCCAGCCCTGT 48613 || || || || || | || || ||||| | ||| | ||| || || ||| Sbjct 288793 GCCAGCACGTGCTTGACAAAGTGCTGCTCGCCCTTGGTCATCGAGTCAAAGTCGCGCTG- 288851 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTAC 48673 || | ||||||||| || || || | |||||||| || || || || |||||| Sbjct 288852 --ATCCTGGCCCAGGTCGACCTCCTCAGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTAC 288909 Query 48674 ATGCCCCATATGTCC 48688 | |||| || ||| Sbjct 288910 GCGTCCCAGATATCC 288924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529050580480