Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq61 212 1e-49 seq30 168 1e-36 >seq61 Length=193651 Score = 212 bits (234), Expect = 1e-49 Identities = 638/966 (66%), Gaps = 27/966 (3%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||||||| || || || ||||| ||| | || |||| |||||||| || ||||| Sbjct 58564 GGCCAGGTTGCAAACAGCGACCTCATCCGGGGCAGTGTACTCGATGATCTCCGTGCAGAG 58505 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| | |||||||| | || |||| || || || |||||||| ||| |||||||| Sbjct 58504 GTTCGAGGACTTGATGATGCCAAGGTTCTTCTGGTTCGACTTGCGGTTGCATGCGTCCTT 58445 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCAC-CAGAATCTTGTCCCAGAGTT 221891 | | ||||||||||| | || ||||| | ||| || | ||||||| || |||||| | Sbjct 58444 GAAAAGCATAAAGGGCACACCCGTCTCGATCTG-GCAGCTGAGAATCTGGTACCAGAGGT 58386 Query 221892 CTCTGGCGCTCACCGTCCTCTTGACTGC-ACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 | ||||| || ||| || ||| || |||||| ||| || || | |||||| Sbjct 58385 CCTGGGCGCGCATCGT-CTTGCGACCGCGACCCTC---CTTCTCGTAGCGCTCGTAGAGC 58330 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCC--TGGACACCTGGCGGGACACATCA 222008 | |||| || || || | || || || ||| | | | |||| || | | Sbjct 58329 TCCTTGAACTCGTCGCCATAGACGTCCGAGAGCCCCTTGGCCTCGT-TCGGG-CAAAAGA 58272 Query 222009 GACTCCA-GTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 | |||| |||| |||| | | ||| | || |||||| ||||| |||| ||| ||||| Sbjct 58271 GCGTCCAGGTGC-TGTTCGCCTCGACGCGCTCCATGAAAAGGTCAGGGACCCAGAGCGCG 58213 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | |||||| || | | || | ||||||| |||| ||| || | || || | ||| Sbjct 58212 TAAAAGAGGTCGCGCGCGCGGTTCTCCTCCTTACCGTGGTTCTTGCGGAGCTCAATAAAG 58153 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || | ||| || ||||| ||||| || || | ||| | | ||| |||||| | Sbjct 58152 TCTTCGACGTCGGCATGCCAGGGCTCAAGGTACATGGCAAAGGAGCCCTTGCGCTTGCCG 58093 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 || ||||| ||||| | || ||||||||| ||| || | || || | ||| Sbjct 58092 CCGCCCTGGTCCACGTAGCGGGCCGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCG 58033 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTG--GC 222303 ||||| ||||||||||| | ||| || | ||| || | | ||| | | Sbjct 58032 TTGGACTTGCCGTTGGTGCCGGCCACGTA-GCTTC-CCGAAGCGCGAATGTTGTGGATGT 57975 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 |||| || || || ||||||| || ||||| ||||| ||| ||| || | | Sbjct 57974 TGACA--CCAATGCCGCCGGCGTACTTGGAGATGCGCGCGCACGTCTCGAGCGTCTGGAA 57917 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||||||||| || ||||| ||||| | || || || || || ||||||||| | Sbjct 57916 GATGCCCTCAATCGAGTCGTCCTTCATGTGCACGAGGAAGCAGCTCGACATCTGCGGGCG 57857 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | || || |||||| || |||||||| ||||||| |||||| | ||||||| Sbjct 57856 CGGGGTACCGGCGTTGAAGAGCGTGGGCGTGGCGTGCGTAAAGAACTTTTGCGACATCAT 57797 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCAT 222543 | ||| ||||| | | | | | | |||| ||| ||| || || | | | ||| Sbjct 57796 GTTGTAGGTCTCAATGGCACGGTCAATGTCTTCCTTGTGGATACCCACAGAGACACGCAT 57737 Query 222544 GTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTG---GAGAGCAGGTACGATTT 222600 | ||| | |||||| | || | | | |||| | || |||||||||||| Sbjct 57736 GAGCATCTGCTGGGGGCGCT---CGGCAATCTTGTCGTTGACCTTGAGCAGGTACGAGCG 57680 Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660 || || |||||||| |||||||||| | || ||||| | ||| |||||||| Sbjct 57679 CTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCGAAGTCGCGCTCGTACTTGACGGCGGC 57620 Query 222661 GTCCAG 222666 ||| || Sbjct 57619 GTCGAG 57614 >seq30 Length=443502 Score = 168 bits (186), Expect = 1e-36 Identities = 387/576 (67%), Gaps = 10/576 (2%) Strand=Plus/Minus Query 25468 CACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAG 25527 ||| | ||||| ||||| |||||||||||| | ||| |||||| || || ||| Sbjct 288929 CACCAGGATATCTGGGACGCGTACAAGAAGGCCGAGGCCTCGTTCTGGACGGCTGAGGAG 288870 Query 25528 ATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTT 25587 | || |||| | |||| | || || || | | |||| | ||||||||| ||| Sbjct 288869 GTCGACCTGGGCCAGGATCAGCGCGACTTTGACTCGATGACCAAGGGCGAGCAGCACTTT 288810 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 ||||| ||||| |||| |||||||| |||| || || || || |||||| || Sbjct 288809 GTCAAGCACGTGCTGGCGTTCTTTGCTTCCTCGGACGGCATCGTCCTCGAGAACGTGGTG 288750 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGT-GGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| || || || ||| ||| | |||||| || || ||||| |||||||| Sbjct 288749 GAGAACTTTTGTAGTGAGGTG-AGTGTGCCGGAGGCGCGCTGCTTTTACGGCTTCCAGAT 288691 Query 25707 GGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTAC 25763 ||||||||| || | || | |||||||| | ||| || || || |||||| Sbjct 288690 GGCCATCGAGAACATTCATGCCGAGGTGTACTC---GCTGCTCATCGACACCTACATTCG 288634 Query 25764 AGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAG 25823 ||| | |||||| | | || || |||| | | | || || | | Sbjct 288633 CGACCGCACCGAGAAGCACAGTCTTTTCAATGCCCTTACGACTTTGCCGTGCGTGCGGGA 288574 Query 25824 GAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCT 25883 |||||||| |||||| ||| | || || || | | || |||| ||||| || Sbjct 288573 GAAGGCGCAGTGGGCGATGCGCTACATGGACGGCAACATTTGCACCTTTGCTGAGCGCCT 288514 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCT 25942 || | |||||| || ||||| |||||||| || || || || |||| | ||||| | Sbjct 288513 TGTTGGCTTTGCCGCCGTGGAAGGCATCTTCTTTTCTGGCTCTTTCTGCG-CGATCTTTT 288455 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || |||||| || || |||||||||||||||||||||| | | Sbjct 288454 GGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTTTCCAACGAGCTCATCAGCCGCG 288395 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||||||| | |||| || ||||| ||||| |||| Sbjct 288394 ACGAGGGCATGCACACTGACTTTGCTTGCCTCCTCT 288359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841061399680