Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizochytrium_20sp._20CCTCC_20M209059_20[genbank_20GCA_5F000818945. 1_202015-01-15] 322 sequences; 39,089,698 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 8e-14 >seq7 Length=852142 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || ||||| || |||||||| ||||| || ||||| Sbjct 76959 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGAATGCCCTCCTTA 76900 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| || ||||| |||||||| || | | |||||||| || Sbjct 76899 TCCTGGATCTTCTGCTTGACGTTCTCAATAGTGTCCGAAGGCTCGACATCAAGGGTGATG 76840 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| ||||||||||| || || Sbjct 76839 GTTTTGCCCGTGAGGGTCTTAACGAAGATCTG 76808 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||| ||||| || || ||||| || |||||||| || || || ||||| Sbjct 77187 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGGGATACCCTCCTTA 77128 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || |||||||| || ||||| ||||| || || | | |||||||| || Sbjct 77127 TCCTGAATCTTCTGCTTGACGTTCTCAATGGTGTCCGAAGGCTCGACATCAAGGGTGATG 77068 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || |||||||||||||| || ||||| || Sbjct 77067 GTCTTGCCGGTGAGAGTCTTTACAAAAATCTG 77036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268165387857656